Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151089g00020 ATGATCATGGAGAATCTAGCAATACTTTTTATAGTTTCTTTCGCGTTTATAAGCATTATCATCACCGATAATCTAGCAATACTTGTTATGCTTTCTTTTGTGTTTGTAACCATTATTCATCATATTCTGAAATCCAAACTAGGAATCAACATACATAAATCAACCAAATTCCCACCAGGACCTAAACCTTTGCCAATCATAGGAAACATCTTAGAACTTGGCAACCAACCTCACAAAGCACTTGCTAACCTTTCTCAAACATATGGACCAATAATGAGTCTCAAACTTGGTAACATAACCACCATAGTTATCTCATCTCCAACCTTAGCCAAACAAGTCCTCCAAATATATGACCAAATTTTTTCCCATAGAACAATTCCGGATACCGTTAAGGTACTTGATCACCACTTGTATTCAGTGGGATGGTTGCCGCCTTCTTCGCCTCAATGGAGGATCCTTAGGAGAGTTTGTGCCACCAGAGTGTTCTCTCCGCAACAACTTGATTCCACGCAAGTTCTTCGCCAAAAGATACTGCATGAACTAATGGATTTTGTGAAGCAAAAGAGTGAAAAAGGCGAAGTTTTGAATATCGGTGAGACTTGTTTTACAACAATACTTAATTCTGTATCCAACACTTTCTTTTCCGTCAACGTGGCTCATTACGGCGAATCTTGTAAGTCTCAAGAATTCAAGGATATAATTTGGGGCATTGGGGAAGAATCTGGAAAGCCTAATGTGGTGGATTTCTTTCCAATGTTTAGATTTTTTGATCCACAAGGTGCACGTGCAAGGATGACCAAGCACACTGAAAAGTTGATAGCTTTCGTTGATGGTCTTACAGAAGAAAGATTGAAATCAAGAGCTCTAGAAAAGGAGACTACCAATAAAAGGTGCAAAGATGTGTTAGATTCTATTTTAGATGTTATGTTGGAAGAAAATTCTCAAGTGAGCCGTCTCCATGTTTTGCATCTATTTCTGATTTTATTTATGGCTGGAGTAGACTCAACATCAATCACCATAGAATGGACAATGACCGAGTTATTACGTAATCCAGAAAAGCTAAGAAAACTTAGAGAAGAGCTTCAACGTGTTCTTGGCAAAGGTGAACAAGTTCTTGAAGAATCACACATATCAAAGCTTCCTTATCTAAGAGCAGTGGTTAAAGAAACTTTGCGCATGCATCCACCTGCCCCATTGCTAGCGCCACACAAGGCGAGCGAGGACGTTGAGATAAGTGGTTTCATGATACGAAAAGATACACAAGTTTGGGTTAATATATGGGCCATGGGAAAAGATTCAAGTGTTTGGGAGAATCCAAATGAATTCATGCCTGAAAGATTCTTAGATAGTAAGATTGATATTCATGGTCGTGATTTTGAATTACTTCCGTTTGGTGCCGGAAGAAGGATGTGTCCTGGATTGCCATTGGCTTATAGAAGTGTGCACGTTGTGTTGGCTTCTCTTCTAAATGGGTATGATTGGAAGCTACCAAATGGACAAGATTCAAAAGATTTGGATATGTCTGAGAGATTTGGACTTACTTTGCATAAGGCTCAACCTCTCCAAGCCGTTCCCATAAAATCACAATAA 1590 0.3899 MIMENLAILFIVSFAFISIIITDNLAILVMLSFVFVTIIHHILKSKLGINIHKSTKFPPGPKPLPIIGNILELGNQPHKALANLSQTYGPIMSLKLGNITTIVISSPTLAKQVLQIYDQIFSHRTIPDTVKVLDHHLYSVGWLPPSSPQWRILRRVCATRVFSPQQLDSTQVLRQKILHELMDFVKQKSEKGEVLNIGETCFTTILNSVSNTFFSVNVAHYGESCKSQEFKDIIWGIGEESGKPNVVDFFPMFRFFDPQGARARMTKHTEKLIAFVDGLTEERLKSRALEKETTNKRCKDVLDSILDVMLEENSQVSRLHVLHLFLILFMAGVDSTSITIEWTMTELLRNPEKLRKLREELQRVLGKGEQVLEESHISKLPYLRAVVKETLRMHPPAPLLAPHKASEDVEISGFMIRKDTQVWVNIWAMGKDSSVWENPNEFMPERFLDSKIDIHGRDFELLPFGAGRRMCPGLPLAYRSVHVVLASLLNGYDWKLPNGQDSKDLDMSERFGLTLHKAQPLQAVPIKSQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151089g00020 529 FunFam Cytochrome P450 76C4 50 524 - -
Stsc151089g00020 529 SUPERFAMILY Cytochrome P450 52 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 85 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 CDD CYP76-like 85 525 - -
Stsc151089g00020 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Stsc151089g00020 529 Pfam Cytochrome P450 58 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 Coils Coil 354 374 - -
Stsc151089g00020 529 Gene3D Cytochrome P450 50 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc151089g00020 529 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 31 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151089g00020 Stsc-Chr151089 123045 129477 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151089g00020 53 529 Cytochrome P450 AT2G45550 48.637 9.69e-174 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151089g00020 - - aip:107626003 701.434