Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151089g00007 ATGAATTCCATACCTTCAAAAAGCTTATGGATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAGTGTTACATTACATATGAGGGTGATTCTGATGAGGGTTCTGGAGGACAAGAATTGGTGAAGGCAGAAAAAGCTTCATCCGGTGCCATGATCACCCCTTATGTTGGAATGGTGTTTAAGAGTGATGATGAAGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTGTTAGGAAGGAAAGGTCTAGGGTTAGCCCCCAGTTGGGAATTTACAAGCGGGACTTTGTTTGTTACTGTTCCGGATTCGCCCCGGTGAAGAGGAAGCCTAATGGAGAGCACCATAGAGATAGGAAATCGGTTAGGTGCGGATGCGATGCGAAGATGTATCTGTCTAAAGAGGTGGTTGATGGGGTTTCCCAATGGTTTGTAGTGCAATTCAGTAATATCCATAATCATGAGCTTCTGGAAGATGACCAAGTTCGGCTTCTTCCGGCGTATCGCAAGATTCACGAGGCTGATCAAGAGCGCATACTCTTGCTTTCTAAAGCAGGGTTTCCGATACACCGGATAGTGAAGATGCTGGAGCTGGAAAAGGGGATTCAAGGTGGGCAATTGCCTTTCTTGGAGAGGGATGTGAGGAACTTTGTTCAAAACCGTAAGAAGGTTGTTCAAGAGAACGAGGCATTGCTCACTGAGAAGAGGGAAAATGATATATCAGAACTTCTTGAGGCCTGCAAAGCCATGAAAGAAGTTGATGGTGACTTTGTTTATGATTTCACAGTGGATGAGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGTGAATCTGTTAATGCAAATGCTATGTTTGGCGATGTGGTTTATTTCGACACAACATATCGATCCATCACTTATGGATTGCTTTTTGGAGTGTGGTTTGGTATTGATAGCTGTGGCAGAACCGTCTTCTTCGGTTCTGTTTTGTTGCAGGATGAAACTCCTCAATCCTTCTCATGGGCATTGCAGACTTTTCTCCGATTCATGAACGGAAGATGCCCACAAACAATTCTAACTGATCTTGACCCTGGGCTTAAAGATGCCATTAGAAGTGAATATCCAGGAACTAAACATGTCATTCCACCATGGAATATTCTATACAAGGTACCGAGTTGGTTTTCTCTTCCTGTTGGGCCGCGCTATGCAGAATTTAAATCCGTGTTTGATGCATTAATTCAAATTGAGAATACAGAGGAGTTTGAACTGCAGTGGAGAGACATGATTTCTGTGTTTGGACTTGGTTCAGATAAACACATGGATTTACTGTATTCTGTTCGAGCATCCTGGGCACAATCCTATGTGAGAGGTTACTTTCTAGCTCAAATGGCTACAATAACTTACTCGAAATCAATAGATGCTTTTCTGAAAGGGATCTTTGCTGCACAAACATGTTTGCGCAGCTTTTTCGAGCAGGTTGGAATTTCTGCCAACATTCAACATCAAGCGAATCAGGAGACTCACTATATGCATCTCAAAACTTGCATACCTGTTGAAGAGCATGCGCGGAGTATCCTCACGCCTTTTGCTTTCAATGCTTTGCAGCAAGAGTTATTGCTGGCCATGCAATATGCTGCATCTGAGATGGCCAATGGATCATATATTGTGCGGCACTTCAAGAGTATGGATGGAGAACGACTCGTGATATGGTTGGCCGAAGAGGAACAAATTCACTGCTCTTGCAAGGAGTTTGAATCCTCTGGGATATTGTGCAGACATGCTCTTCGCGTGTTCATCATAAAGAATTACTTTCAGCTCCCTGACAAATACTATCTAAGCAGATGGAGAAGGGAATGTTCTCTACTTATTGATGATGATCACAATAATCAAGGTACTGATGGGGAGTGGTTTCAAGAGTGCCAGTCCCTAGCCGAAACTTTGTTTTCGGAATCCTCCATTACAAAGGAACGATCTGACTATGCTCGAATTCAACTGACAAAAGAACTTACCAGGATTCTCAATGAGGTCAGAAATCTGCCAGACACCGATGGAGTCCTAATGAACATGACTGTATCGCCAACCGGTTAG 2076 0.4316 MNSIPSKSLWIRRQQCPCGDWKCYITYEGDSDEGSGGQELVKAEKASSGAMITPYVGMVFKSDDEAFEYYGNFARKNGFSVRKERSRVSPQLGIYKRDFVCYCSGFAPVKRKPNGEHHRDRKSVRCGCDAKMYLSKEVVDGVSQWFVVQFSNIHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLTEKRENDISELLEACKAMKEVDGDFVYDFTVDENDKVENVAWSYGESVNANAMFGDVVYFDTTYRSITYGLLFGVWFGIDSCGRTVFFGSVLLQDETPQSFSWALQTFLRFMNGRCPQTILTDLDPGLKDAIRSEYPGTKHVIPPWNILYKVPSWFSLPVGPRYAEFKSVFDALIQIENTEEFELQWRDMISVFGLGSDKHMDLLYSVRASWAQSYVRGYFLAQMATITYSKSIDAFLKGIFAAQTCLRSFFEQVGISANIQHQANQETHYMHLKTCIPVEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKSMDGERLVIWLAEEEQIHCSCKEFESSGILCRHALRVFIIKNYFQLPDKYYLSRWRRECSLLIDDDHNNQGTDGEWFQECQSLAETLFSESSITKERSDYARIQLTKELTRILNEVRNLPDTDGVLMNMTVSPTG 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151089g00007 691 SMART 26again6 573 600 IPR006564 GO:0008270
Stsc151089g00007 691 Pfam MULE transposase domain 291 382 IPR018289 -
Stsc151089g00007 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Stsc151089g00007 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Stsc151089g00007 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 658 IPR031052 GO:0006355
Stsc151089g00007 691 Pfam SWIM zinc finger 568 596 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151089g00007 Stsc-Chr151089 52005 54539 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc151089g00007 MULE 5.2e-15 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151089g00007 - - gmx:100817107 1244.18