Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151089g00001 ATGATTGAAAACTGGAAGGACCAGAACTTGCTACTGGGAACTTCATGCAACAACAACCACCATCACCAACAACCCAAGCTTGAGAACTTCCTCGGCGGACACTCCTTCACCGATCATCATCAAGATGGAGATTACATCTTCCAAAACTGCTCATCAACGGGCGGCGATGGCGGAGGCAGCGGCAGCGGCGGTGGAAGCACAAACTCAATAGGGTTGTCGATGATAAAGACATGGCTGAGGAACCAACCCCTTCATCATAATCACTCATCAGAAAACAATAAAGAAACCATGGTTGCAACTTCAGATAATAATAATAATACAGCAACTGCACCAACAACAACTACTAATAGTGTGCAAACTTTGTCCCTTTCTATGAGTACCGGCCATGGATCACTTTTACCACCTACTAATACTGTTAGTGTTGCCGGTGCCGGAGGAGGAGGAGGAGGAGGAGACAGTTATTCTTCTTCCGAAATAAACAGTAGCAGCAACAACAAGCAAGTAGTAGTAGTAGAGAATGGTGGGGGTATTGTTGAGAATACCAATAATGGGGCAAAGAAGTCCATTGACACTTTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGGAGGCAAGTTTACCTAGGGGGTTATGACAAAGAAGAGAAGGCAGCTAGAGCCTATGATTTAGCAGCACTAAAATACTGGGGAACCACAACAACAACAAATTTTCCGATTAGTCAATATGAAAAGGAGTTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTTGCTTCATTGAGAAGGAAGAGTAGTGGATTTTCTCGTGGTGCATCCATTTATCGTGGAGTAACAAGGCATCACCAACATGGTAGATGGCAAGCTCGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTATTTGGGAACTTTTAGCACACAGGAAGAAGCAGCAGAAGCATATGACATAGCAGCAATAAAGTTCAGAGGTTTGAGTGCAGTTACAAACTTTGACATGAGCAGATATGATGTGAAGAGCATTCTAGAGAGTAGCACCTTGCCAATTGGTGGTGCTGCCAAGAGGTTGAAGGAAATGGACAATCATAACAATGTAGACCTGATAACTAATGTTGATAATGTTCATCAGAGACAACAACTGCAATTAGAAGATCACAGTAACATCAGCATCAATTCTCACCATCGTTCCCTAACTGATGGAATCAACAACTTTCATGGTTGGCCTGCTACCCTTGCATTCCAACAACACTACACTGCTAACTATGGTTCATCATCATCATCATCACAGAGGCTTTGGTGCAAGCAAGAGCAAGATTCTTCTGATCATAACAATTTTCATCAAGAGATTCATCCATTGCAGCTAGGAGGAGGTGGTACCCACAATTTCTTTCAGCATGGTATCATGAGCATGGACCATTCAGCTTCCATGGACAATAACAACAGCTCCGGATCAAGCTCTGTGGTGTATGGTGGTGGTGATGGCAATGGTTATGTGTTTCCAGTGGGTTCTGTTATTGGCAATGATAGCAGCAATGAAATCAAGGGACTTGGCTATGATAGTACTGTTTTTGGTAGTGAGGCATATAATCAAACACATGGAAGGCATTTGTATTATCAGCAACAATCATCAACAATGGAGCATAACAATAATAATAATGGAGTGGTAGTAGTTAAGGGTATCCCATATGATCATTACCATCATCAACATCATGGTGGTTCCAACAATTGGGTTCCAACTGCCATACCCACTATTGCAGCATCAAGGTCTCTCTGCCATGGGGCTCCACCATTCACATTATTGCATGAATGA 1887 0.4303 MIENWKDQNLLLGTSCNNNHHHQQPKLENFLGGHSFTDHHQDGDYIFQNCSSTGGDGGGSGSGGGSTNSIGLSMIKTWLRNQPLHHNHSSENNKETMVATSDNNNNTATAPTTTTNSVQTLSLSMSTGHGSLLPPTNTVSVAGAGGGGGGGDSYSSSEINSSSNNKQVVVVENGGGIVENTNNGAKKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLSAVTNFDMSRYDVKSILESSTLPIGGAAKRLKEMDNHNNVDLITNVDNVHQRQQLQLEDHSNISINSHHRSLTDGINNFHGWPATLAFQQHYTANYGSSSSSSQRLWCKQEQDSSDHNNFHQEIHPLQLGGGGTHNFFQHGIMSMDHSASMDNNNSSGSSSVVYGGGDGNGYVFPVGSVIGNDSSNEIKGLGYDSTVFGSEAYNQTHGRHLYYQQQSSTMEHNNNNNGVVVVKGIPYDHYHHQHHGGSNNWVPTAIPTIAASRSLCHGAPPFTLLHE 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151089g00001 628 CDD AP2 197 266 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 ProSiteProfiles AP2/ERF domain profile. 198 264 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 SUPERFAMILY DNA-binding domain 197 266 IPR016177 GO:0003677
Stsc151089g00001 628 FunFam AP2-like ethylene-responsive transcription factor 299 360 - -
Stsc151089g00001 628 Pfam AP2 domain 198 256 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 Pfam AP2 domain 300 350 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 FunFam AP2-like ethylene-responsive transcription factor ANT 197 266 - -
Stsc151089g00001 628 MobiDBLite consensus disorder prediction 49 69 - -
Stsc151089g00001 628 SUPERFAMILY DNA-binding domain 299 360 IPR016177 GO:0003677
Stsc151089g00001 628 SMART rav1_2 300 364 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 SMART rav1_2 198 270 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 MobiDBLite consensus disorder prediction 84 115 - -
Stsc151089g00001 628 PRINTS Ethylene responsive element binding protein signature 199 210 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 PRINTS Ethylene responsive element binding protein signature 340 360 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 CDD AP2 299 360 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 Gene3D AP2/ERF domain 300 360 IPR036955 GO:0003700|GO:0006355
Stsc151089g00001 628 Gene3D AP2/ERF domain 198 266 IPR036955 GO:0003700|GO:0006355
Stsc151089g00001 628 ProSiteProfiles AP2/ERF domain profile. 300 358 IPR001471 GO:0003700|GO:0006355
Stsc151089g00001 628 MobiDBLite consensus disorder prediction 93 115 - -
Stsc151089g00001 628 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151089g00001 Stsc-Chr151089 4964 9530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151089g00001 177 534 AP2-EREBP Transcription Factor Family AT5G17430 59.358 4.46e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc151089g00001 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151089g00001 K09285 - gmx:100797584 598.586