Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151086g00012 ATGGCTTTTCCCAATCTTGCCTTCCTCTTTATCTTTATCATCTGTGTCCATGCTGATGCAGATGACTTTCACTTCTCAGGGTCCTATTGCACAACACTTAACAAAACCACCCCTAACAGCCCTTTCCACCTGAACCTAAAGACCCTTTTCAATTACCTATCTTCCAATGCCACAACCAGCAACAAGGATTTTTACAAAGCCAAAGTCCTTGGCACAAAAAACCACTCTGATACAATATATGGACTCTACTTGTGCAGGGGTGACCTCCCTTCTCAACTTTGTGGAAAGTGCATCTCAGAAGCAACCCATAGCTACTTGTTCCCAAACCAAGAAACAGATGTTGATTGCTCCTTGTCCATAGAGGGAGGGGTCACATATGAAGAGTGCATGATTCAATATTCCAATAACCTCACTTTCTTCTCCACAGTTGACTTAACACCTTCTTCTAGTTCTTGCATGTCAAGAAATATGTCTGCAACATTTGTGCAGTTAGCTTTGGATACTTTGAAAGAAGTTACTAACGAAGCCGCGTTTTCTAGAGGGAAGTATGCTACAAAAGAAGTAAGAATATCTGGATTTCAATCCCTTTACTCTCTGGCTCAGTGCACACCAGATCTGTCATCTCAAGATTGCAGAAGCTGTTTGGCTAACACAACAAAACAACTTCAACAATTAAAGTGCCGTGGGAATGAAGCAACAAGTTACAGCCGCAGCTGCTACTTGAGGTATGCTATGTACCCTTTCTTTCGCGCAAGCAAGAATCCGGCACCGGTAGGACTCATTCCTGTAACAAATCTTTCAAATGATAATCCAATTCCAGATGGCTATGTTTCCCACAATTGTTCATCAACCAATGAAACCATCATCAAGAATGGTGATAGTAATTTTGCTTCTGAGCTGAGGACACTCCTCTCTTCCTTGTCTTCTAATGCCACCACCAACAAAATTGGATTCTACAAGACCACCATTGGCAGGGTCACCGGTCTCTTCATGTGCCGTGGAGATATATCCCCAATACACTGCGAAAACTGCGTCCGAAACGCTGCAGAAAGAATACATTCAGAGTGTGGTCCTTACAAGGAGGCGATTATCTGGTTCTCTCATTGCATACTTCGCTATTCTCATCAAGCTCTCCTATCCACCTGGAATGAAACTAGTCCGGCGTTTCACGAGTTCAACGTTGATGGCAACACCTCCAGCGGCCTTAACAAACAGCTTCAACAGAACAACTTCACTCTGACATTAGTGAGCACTTTAACAGGCATACAAAATATGAATGAGGAGAGCACTACCAAGAATTTTGTAACTGCAAATGAAAAACTGAATAGTGTCCAAACTCTGTATGCTCTTGGACAATGTACACCAGATATAAGTGGTTCTGAGTGCAGCTCATGCTTACAGAACATTTTCTTGTATGAAATTCCATGGTGTTGTTTGTCAAGTCCAGAGGGAAAAGTTCTCTATCCTAGCTGCTATATGATGTTTGGATTGTCCAAATTTAATGGAGATGGTGATGGAGTGGAAGTGGAGCCACCCAGTCAGGCTACTCTTCCTCAAGGAGGAGATATAGTCGGTGATGAAGGTAGTACTTTGGAGCCATTGCAAATTGATTGGACTATAATTGAGGCAGCAACAAATAACTTTTCAACAGAGAACTTGATTGGGAAAGGTGGATTTGGAAATGTTTATAAGGGTATTCTTTCTGATGGTAGACATATAGCTGCAAAAAGATTATCAAAGATTTCTAAACAAGGTATTATGGAGTTCAGGAATGAGGTCTTGTTGATAGCTAAATTTCAACATAGAAATCTTGTAACATTCATAGGTTTCTGCTTGAAAGATCAAGAGAAGATACTCATATACGAATATGTACCAAATGGAAGCCTTGATTACTTTTTATTTGGTATGAATTCTTCTCTCGTATACCGGGTTTGGGAAAAGTGGACAGAAAACAAAGCATTAAGCATTTTGGACCAAAAAATAGAGAATTATGCTGAAATTGAAGTCATTAGGTGTATTCAAGTTGGATTGTTATGTGTTCAAGAAAACCCAGATGTTAGACCTCCAATGATAACAGTTATTTCGTATCTTGATAACCACTTAATTGAAATGACATCTCCACAAGAACCAGCATTTATCATGCATAGAAGAATAATTGATCAAGCACAAGTAGCTGGTGGTGAGTCAAGATTTGCTCATACCAATTTTTCACCATCCTCTATCAATGAGATGTCTATAAGTGAAGATCTTTCTAGATAG 2259 0.4015 MAFPNLAFLFIFIICVHADADDFHFSGSYCTTLNKTTPNSPFHLNLKTLFNYLSSNATTSNKDFYKAKVLGTKNHSDTIYGLYLCRGDLPSQLCGKCISEATHSYLFPNQETDVDCSLSIEGGVTYEECMIQYSNNLTFFSTVDLTPSSSSCMSRNMSATFVQLALDTLKEVTNEAAFSRGKYATKEVRISGFQSLYSLAQCTPDLSSQDCRSCLANTTKQLQQLKCRGNEATSYSRSCYLRYAMYPFFRASKNPAPVGLIPVTNLSNDNPIPDGYVSHNCSSTNETIIKNGDSNFASELRTLLSSLSSNATTNKIGFYKTTIGRVTGLFMCRGDISPIHCENCVRNAAERIHSECGPYKEAIIWFSHCILRYSHQALLSTWNETSPAFHEFNVDGNTSSGLNKQLQQNNFTLTLVSTLTGIQNMNEESTTKNFVTANEKLNSVQTLYALGQCTPDISGSECSSCLQNIFLYEIPWCCLSSPEGKVLYPSCYMMFGLSKFNGDGDGVEVEPPSQATLPQGGDIVGDEGSTLEPLQIDWTIIEAATNNFSTENLIGKGGFGNVYKGILSDGRHIAAKRLSKISKQGIMEFRNEVLLIAKFQHRNLVTFIGFCLKDQEKILIYEYVPNGSLDYFLFGMNSSLVYRVWEKWTENKALSILDQKIENYAEIEVIRCIQVGLLCVQENPDVRPPMITVISYLDNHLIEMTSPQEPAFIMHRRIIDQAQVAGGESRFAHTNFSPSSINEMSISEDLSR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151086g00012 752 SUPERFAMILY Protein kinase-like (PK-like) 531 642 IPR011009 -
Stsc151086g00012 752 ProSiteProfiles Gnk2-homologous domain profile. 393 500 IPR002902 -
Stsc151086g00012 752 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 275 504 - -
Stsc151086g00012 752 Gene3D Transferase(Phosphotransferase) domain 1 622 713 - -
Stsc151086g00012 752 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 514 623 - -
Stsc151086g00012 752 ProSiteProfiles Gnk2-homologous domain profile. 276 378 IPR002902 -
Stsc151086g00012 752 Gene3D - 147 248 IPR038408 -
Stsc151086g00012 752 Gene3D - 274 377 IPR038408 -
Stsc151086g00012 752 Gene3D - 396 500 IPR038408 -
Stsc151086g00012 752 Gene3D - 23 137 IPR038408 -
Stsc151086g00012 752 ProSiteProfiles Protein kinase domain profile. 548 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151086g00012 752 Gene3D Phosphorylase Kinase; domain 1 526 621 - -
Stsc151086g00012 752 Pfam Protein tyrosine and serine/threonine kinase 550 635 IPR001245 GO:0004672|GO:0006468
Stsc151086g00012 752 ProSitePatterns Protein kinases ATP-binding region signature. 554 576 IPR017441 GO:0005524
Stsc151086g00012 752 ProSiteProfiles Gnk2-homologous domain profile. 24 138 IPR002902 -
Stsc151086g00012 752 Pfam Salt stress response/antifungal 407 495 IPR002902 -
Stsc151086g00012 752 Pfam Salt stress response/antifungal 30 135 IPR002902 -
Stsc151086g00012 752 Pfam Salt stress response/antifungal 281 375 IPR002902 -
Stsc151086g00012 752 Pfam Salt stress response/antifungal 158 244 IPR002902 -
Stsc151086g00012 752 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151086g00012 Stsc-Chr151086 105335 109299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151086g00012 267 648 Receptor kinase-like Gene Family AT4G23160 35.455 7.73e-64 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151086g00012 PK_Tyr_Ser-Thr 6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151086g00012 - - pvu:PHAVU_007G051400g 578.556