Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151086g00001 ATGCTTCCTGCAATAGACATGACCCCAACCCTGTTTTTGGGTGAAAGATTCTCAACTAGATCTGGCAAACTTACTCGTGGAGATATTGTGATTATTCGCTCCCCTCAAAACCCTAAGAGGAGGCTGACTAAACGCTTGGTTGGAATGGAGAATGATACCATTACATACATTTCTAACCCTGATGAGCCTGATAAGCAGGAAACTATTGTGGTTCCAAAGGGTCACGTTTGGATACAGGGTGATAATGTAAATAATTTCAAAGATTCAAGGAATTTTGGTGCTGTTCCTTATGGGCTGATTGAGCAGAGGACATTTTGGAGGGTATCGCCAGCTAAAGACTTTGGACCTTTCTGGAAACATTGA 363 0.4215 MLPAIDMTPTLFLGERFSTRSGKLTRGDIVIIRSPQNPKRRLTKRLVGMENDTITYISNPDEPDKQETIVVPKGHVWIQGDNVNNFKDSRNFGAVPYGLIEQRTFWRVSPAKDFGPFWKH 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151086g00001 120 Gene3D Umud Fragment, subunit A 2 119 - -
Stsc151086g00001 120 PRINTS Bacterial leader peptidase 1 (S26A) family signature 42 54 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151086g00001 120 PRINTS Bacterial leader peptidase 1 (S26A) family signature 71 90 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151086g00001 120 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 117 - -
Stsc151086g00001 120 CDD S26_SPase_I 7 100 IPR019533 GO:0004252|GO:0006465
Stsc151086g00001 120 Pfam Signal peptidase, peptidase S26 66 106 IPR019533 GO:0004252|GO:0006465
Stsc151086g00001 120 Pfam Signal peptidase, peptidase S26 6 56 IPR019533 GO:0004252|GO:0006465
Stsc151086g00001 120 SUPERFAMILY LexA/Signal peptidase 6 118 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151086g00001 Stsc-Chr151086 1579 2499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151086g00001 1 117 MADS-box Gene Family AT1G29960 51.282 5.52e-41 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151086g00001 K09647 - cave:132170793 154.451