Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151085g00018 ATGCAACTTGGCGGAATCATATCTCCCAGCATAGGAAAACTCAGTCGACTGCGGAGATTGGCACTTCATCAGAACAGTTTACATGGAATCATTCCTAACGAAATTACCAATTGTACTGAGCTAAGAGCATTGTACTTGAGAGGTAATTATCTTCAAGGAGGAATCCCCTCAGATATTGGAAACCTATTGCATTTAAAGATATTGGACTTATCAAGTAACTCACTAAAGGGTGCAATACCTCCTTCTATTGGACATCTTACAAATTTGCAGCTTCTGAACTTGTCAACAAATTTCTTTTCTGGCGAAATCCCTGACACTGGAGTGCTAGGAACCTTTGGGAAAAATGTGTTTATTGGCAATTTAGATCTTTGTGGATGGCAAGTTAAAAAACCATGTCGGACATCACTTGGTTTCCCTGTAGTGTTACCACATGATGAGAATGATGAATCCGAAGTACCCGCCAAAAGAACATCACATTACGTGAAGTGGTTGTTAATTGGTGCAATATCAACAATGGGCATTGCACTTGTCTTAGTACTACTGTTATTCTGGATTTGTTTGCCATCAAAAAAGGAAAGAACTGCTAGGCAATACTCGGAAGTGAACAAACAAGTCAATCCAGAATCAAGTTCAAAGGGTGGTACAATACTAATCACTTTCCATGGTGATCTGCCATATCCATCATCTGAGATCATAGAGAAACTGGAGTCACTTGATGAAGAGGATGTGGTGGGGTCTGGAGGATTCGGTACTGTTTACCGCATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGCTTGATAGAGGACGGGATGGGTCAGATCAAGGGTTTGAAAGGGAACTAGAAATCTTAGGTAGTATCAAGCACATCAATTTAGTAAACCTGCGTGGTTATTGCAGGCTTCCTTCTACAAAGCTCCTTATCTACGATTATTTGTCCCTGGGAAGCTTAGATTGTCTCTTACATGGCAACACTGAGCAATCTTTGAATTGGAGCACTCGCCTAAAGATAGCCCTTGGTTCTGCCCGGGGTTTGGCATACTTGCATCATGACTGCTCCCCAAAAATCGTGCATCGAGACATCAAATCTAGCAACATCCTTCTTGATGAAAACATGGAGCCTCATGTCTCTGATTTTGGACTTGCAAAGCTTTTGGTTGATGATGACTCTCATGTTACTACAGTTGTTGCTGGTACATTCGGCTATTTGGCGCCAGAATATCTACAAAGTGGGAGAGCAACTGAGAAGTCGGATGTATATAGCTTTGGAGTTCTGTTGCTAGAACTGGTAACTGGAAAGAGACCGACAGATCCTTCCTTTCTGAAGAGAGGGCTAAATGTTGTTGGTTGGATGAACACGGTCCTAAAAGAAAACCAATTCGAAGAAGTGGTAGACAAAAGATGCACCAATGCAGATTTGGCATCTGTCGAAGTGATCATCGAACTGGCAGCAAGTTGCACGGATGCAAATGCGGAGGACCGTCCGTCGATGAATGAAGTTGTAAAATTGCTGGAGCACGAGGTTATGCCTCCTTGCCCAGGTGGTTTTTATGAGTCACAATTATATCATTGTTGA 1581 0.4225 MQLGGIISPSIGKLSRLRRLALHQNSLHGIIPNEITNCTELRALYLRGNYLQGGIPSDIGNLLHLKILDLSSNSLKGAIPPSIGHLTNLQLLNLSTNFFSGEIPDTGVLGTFGKNVFIGNLDLCGWQVKKPCRTSLGFPVVLPHDENDESEVPAKRTSHYVKWLLIGAISTMGIALVLVLLLFWICLPSKKERTARQYSEVNKQVNPESSSKGGTILITFHGDLPYPSSEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCGTFAVKRLDRGRDGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLSLGSLDCLLHGNTEQSLNWSTRLKIALGSARGLAYLHHDCSPKIVHRDIKSSNILLDENMEPHVSDFGLAKLLVDDDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFLKRGLNVVGWMNTVLKENQFEEVVDKRCTNADLASVEVIIELAASCTDANAEDRPSMNEVVKLLEHEVMPPCPGGFYESQLYHC 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151085g00018 526 Pfam Protein kinase domain 240 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00018 526 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Stsc151085g00018 526 Gene3D Transferase(Phosphotransferase) domain 1 314 512 - -
Stsc151085g00018 526 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 314 515 - -
Stsc151085g00018 526 SUPERFAMILY Protein kinase-like (PK-like) 216 507 IPR011009 -
Stsc151085g00018 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Stsc151085g00018 526 SMART serkin_6 238 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00018 526 Gene3D Ribonuclease Inhibitor 1 134 IPR032675 -
Stsc151085g00018 526 Pfam Leucine Rich Repeat 64 86 IPR001611 GO:0005515
Stsc151085g00018 526 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 10 507 - -
Stsc151085g00018 526 SUPERFAMILY L domain-like 2 111 - -
Stsc151085g00018 526 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 8 132 - -
Stsc151085g00018 526 Gene3D Phosphorylase Kinase; domain 1 200 313 - -
Stsc151085g00018 526 ProSiteProfiles Protein kinase domain profile. 238 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151085g00018 Stsc-Chr151085 111751 118130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151085g00018 2 515 Receptor kinase-like Gene Family AT2G35620 52.140 1.83e-177 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Stsc151085g00018 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151085g00018 - - gmx:100783363 873.618