Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151085g00017 ATGGAAAGGGTTCTTGTAGCGTGGATGGTTTTGGTGATTTCCACCACTGTTTTCTTCCACTCCTCTCTTGCTCTCACACAAGATGGTGTGACATTGTTGGAAATCAAAAGTAGTTTGAATGACACAAGGAATTTTCTCAGTGACTGGCAACATTCTAATATCAATTCCCATTGTAGATGGACTGGTATCACCTGTTATCCTGGGGAAGAACACCGAGTTCGCTCAATTAATCTGCCTTACATGCAACTTGGCGGAATCATATCTCCCAGCATAGGAAAACTCAGTCGACTGCGGAGATTGGCACTTCATCAGAACAGTTTACATGGAATCATTCCTAACGAAATTACCAATTGTACTGAGCTAAGAGCATTGTACTTGAGAGGTAATTATCTTCAAGGAGGAATCCCCTCAGATATTGGAAACCTATTGCATTTAAAGATATTGGACTTATCAAGTAACTCACTAAAGGGTGCAATACCTCCTTCTATTGGACATCTTACAAATTTGCAGCTTCTGAACTTGTCAACAAATTTCTTTTCTGGCGAAATCCCTGACACTGGAGTGCTAGGAACCTTTGGGAAAAATGTGTTTATTGGCAATTTAGATCTTTGTGGATGGCAAGTTAAAAAACCATGTCGGACATCACTTGGTTTCCCTGTAGTGTTACCACATGATGAGAATGATGAATCCGAAGTACCCGCCAAAAGAACATCACATTACGTGAAGTGGTTGTTAATTGGTGCAATATCAACAATGGGCATTGCACTTGTCTTAGTACTACTGTTATTCTGGATTTGTTTGCCATCAAAAAAGGAAAGAACTGCTAGGCAATACTCGGAAGTGAACAAACAAGTCAATCCAGAATCAAGTTCAAAGGGTGGTACAATACTAATCACTTTCCATGGTGATCTGCCATATCCATCATCTGAGATCATAGAGAAACTGGAGTCACTTGATGAAGAGGATGTGGTGGGGTCTGGAGGATTCGGTACTGTTTACCGCATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGCTTGATAGAGGACGGGATGGGTCAGATCAAGGGTTTGAAAGGGAACTAGAAATCTTAGGTAGTATCAAGCACATCAATTTAGTAAACCTGCGTGGTTATTGCAGGCTTCCTTCTACAAAGCTCCTTATCTACGATTATTTGTCCCTGGGAAGCTTAGATTGTCTCTTACATGGCAACACTGAGCAATCTTTGAATTGGAGCACTCGCCTAAAGATAGCCCTTGGTTCTGCCCGGGGTTTGGCATACTTGCATCATGACTGCTCCCCAAAAATCGTGCATCGAGACATCAAATCTAGCAACATCCTTCTTGATGAAAACATGGAGCCTCATGTCTCTGATTTTGGACTTGCAAAGCTTTTGGTTGATGATGACTCTCATGTTACTACAGTTGTTGCTGGTACATTCGGCTATTTGGCGCCAGAATATCTACAAAGTGGGAGAGCAACTGAGAAGTCGGATGTATATAGCTTTGGAGTTCTGTTGCTAGAACTGGTAACTGGAAAGAGACCGACAGATCCTTCCTTTCTGAAGAGAGGGCTAAATGTTGTTGGTTGGATGAACACGGTCCTAAAAGAAAACCAATTCGAAGAAGTGGTAGACAAAAGATGCACCAATGCAGATTTGGCATCTGTCGAAGTGATCATCGAACTGGCAGCAAGTTGCACGGATGCAAATGCGGAGGACCGTCCGTCGATGAATGAAGTTGTAAAATTGCTGGAGCACGAGGTTATGCCTCCTTGCCCAGGTGGTTTTTATGAGTCACAATTATATCATTGTTGA 1821 0.4223 MERVLVAWMVLVISTTVFFHSSLALTQDGVTLLEIKSSLNDTRNFLSDWQHSNINSHCRWTGITCYPGEEHRVRSINLPYMQLGGIISPSIGKLSRLRRLALHQNSLHGIIPNEITNCTELRALYLRGNYLQGGIPSDIGNLLHLKILDLSSNSLKGAIPPSIGHLTNLQLLNLSTNFFSGEIPDTGVLGTFGKNVFIGNLDLCGWQVKKPCRTSLGFPVVLPHDENDESEVPAKRTSHYVKWLLIGAISTMGIALVLVLLLFWICLPSKKERTARQYSEVNKQVNPESSSKGGTILITFHGDLPYPSSEIIEKLESLDEEDVVGSGGFGTVYRMVMNDCGTFAVKRLDRGRDGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLSLGSLDCLLHGNTEQSLNWSTRLKIALGSARGLAYLHHDCSPKIVHRDIKSSNILLDENMEPHVSDFGLAKLLVDDDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFLKRGLNVVGWMNTVLKENQFEEVVDKRCTNADLASVEVIIELAASCTDANAEDRPSMNEVVKLLEHEVMPPCPGGFYESQLYHC 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151085g00017 606 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 394 595 - -
Stsc151085g00017 606 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 189 - -
Stsc151085g00017 606 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Stsc151085g00017 606 ProSiteProfiles Protein kinase domain profile. 318 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00017 606 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Stsc151085g00017 606 SUPERFAMILY L domain-like 25 207 - -
Stsc151085g00017 606 Pfam Leucine rich repeat 73 131 IPR001611 GO:0005515
Stsc151085g00017 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 69 587 - -
Stsc151085g00017 606 Gene3D Ribonuclease Inhibitor 26 214 IPR032675 -
Stsc151085g00017 606 Pfam Protein kinase domain 320 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00017 606 Gene3D Phosphorylase Kinase; domain 1 280 393 - -
Stsc151085g00017 606 Pfam Leucine Rich Repeat 144 166 IPR001611 GO:0005515
Stsc151085g00017 606 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Stsc151085g00017 606 SMART serkin_6 318 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00017 606 Gene3D Transferase(Phosphotransferase) domain 1 394 592 - -
Stsc151085g00017 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151085g00017 Stsc-Chr151085 111751 118192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151085g00017 1 595 Receptor kinase-like Gene Family AT2G35620 48.235 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Stsc151085g00017 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151085g00017 - - gmx:100783363 972.23