Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151085g00008 ATGGGAAATTGCAACGCTTGCGCCAGAGCGGATGTAGTAGACAGCACAACCACCACAACCACAAAGCCCACCAACCACCGAAAACCCAACCACTTCTCCTCCACTCCTGCCCGCCCCGCCACCCCGATCCGCGTCCTCAACAACGACATCCCCGCAGGCCCGCAGCACCGGGCCCGCATCAGCGACAATTACATACTCGGCCGGGAGCTTGGCCGCGGGGAATTCGGCATAACCTACCTCTGCACTGACCGAGACACCAAAGAAGCTCTCGCATGTAAGTCCATCTCCAAGCGGAAGCTCCGCACCGCCGTCGACGTCGACGACGTGCGGCGCGAGGTGAAGATCATGTCGACGCTCCCGCCGCATCCGAACGTGGTGCAGCTGAAGGGAGCTTATGAGGACGACGAGAATGTTCACATAGTTATGGAGCTCTGTGAAGGCGGCGAGCTCTTCGATAGGATCGTCGCCAGGGGACACTACAGCGAGCGCGCCGCCGCCGGAGTTTTCTGGACGATCGCGGAGGTTGTTAGGATGTGTCACGCTAACGGCGTCATGCATAGGGACCTCAAGCCTGAGAATTTCTTGTTTTCTAACAAGAAGGAGAATTCGCCTCTGAAGGCCATTGATTTTGGATTGTCTGTGTTCTTCAAACCTGGGGAGAAGTTTTCGGAGATTGTGGGGAGTCCTTACTACATGGCGCCGGAGGTATTGAAGAGGAGCTATGGGCCAGAAGTTGATGTATGGAGTGCTGGCGTGATTCTTTATATTTTGCTCTGTGGGGTTCCTCCGTTTTGGGCAGAGACGGAGCAAGGTGTGGCTCTTGCAATACTGAGGGGGGTGATTGATTTCAAGAGGGAACCTTGGCCTCATATATCAGATAGCGCTAAAAGCCTTGTCCGGCAGATGTTGGAACCGGATCCTAAAAAGCGTTTGACAGCTGAACAGGTGCTTGCACACCCATGGCTACAAAATGCCAAGAAAGCTCCAAATGTTCCATTAGGTGATCTTGTGAGATCAAGGCTTAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGCTCTACGGGTAATTGCAGATCATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTTACGTTGATGGATACCGACAAAGACGGAAGAGTAACATACGAAGAACTAAAGGCTGGGTTGAGGAAAGTTGGTTCACAATTGGCTGAACCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGGGAGTTTGTAGCTGTGACAATTCACTTGCAAAAAATGGAAAACGATGAGCATTTCCGCAAAGCATTTAAGTTTTTTGACAAAGACAGTAGTGGATATATTGAGTTTCGTGAACTACAGGAAGCGTTAGCAGATGAGTCAGGAGAAACTGATCATGATGTTTTGAATGACATCATGCGTGAAGTTGACACTGATAAGGATGGTCGCATCAGTTATGAGGAGTTTGTTGCCATGATGAAAACTGGAACAGACTGGAGAAAAGCATCTAGGCAATACTCAAGGGAGAGATTTAAAAGTTTGAGCATAAACTTGATGAAAGATGGCTCGCTTCAGCTTCATGACGGTATCAGTGGTCAAGCTGTAGTGGTTTAA 1641 0.4899 MGNCNACARADVVDSTTTTTTKPTNHRKPNHFSSTPARPATPIRVLNNDIPAGPQHRARISDNYILGRELGRGEFGITYLCTDRDTKEALACKSISKRKLRTAVDVDDVRREVKIMSTLPPHPNVVQLKGAYEDDENVHIVMELCEGGELFDRIVARGHYSERAAAGVFWTIAEVVRMCHANGVMHRDLKPENFLFSNKKENSPLKAIDFGLSVFFKPGEKFSEIVGSPYYMAPEVLKRSYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPHISDSAKSLVRQMLEPDPKKRLTAEQVLAHPWLQNAKKAPNVPLGDLVRSRLKQFSMMNRFKKKALRVIADHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFRKAFKFFDKDSSGYIEFRELQEALADESGETDHDVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151085g00008 546 SMART efh_1 369 397 IPR002048 GO:0005509
Stsc151085g00008 546 SMART efh_1 441 469 IPR002048 GO:0005509
Stsc151085g00008 546 SMART efh_1 405 433 IPR002048 GO:0005509
Stsc151085g00008 546 SMART efh_1 477 505 IPR002048 GO:0005509
Stsc151085g00008 546 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00008 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Stsc151085g00008 546 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Stsc151085g00008 546 Gene3D - 331 506 - -
Stsc151085g00008 546 Pfam EF-hand domain pair 440 503 IPR002048 GO:0005509
Stsc151085g00008 546 Pfam EF-hand domain pair 370 429 IPR002048 GO:0005509
Stsc151085g00008 546 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Stsc151085g00008 546 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Stsc151085g00008 546 SUPERFAMILY Protein kinase-like (PK-like) 61 330 IPR011009 -
Stsc151085g00008 546 FunFam Calcium-dependent protein kinase 7 331 506 - -
Stsc151085g00008 546 FunFam Calcium-dependent protein kinase 1 66 149 - -
Stsc151085g00008 546 CDD EFh 441 503 IPR002048 GO:0005509
Stsc151085g00008 546 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Stsc151085g00008 546 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Stsc151085g00008 546 SUPERFAMILY EF-hand 350 529 IPR011992 -
Stsc151085g00008 546 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Stsc151085g00008 546 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Stsc151085g00008 546 CDD STKc_CAMK 63 321 - -
Stsc151085g00008 546 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Stsc151085g00008 546 FunFam calcium-dependent protein kinase 13 150 330 - -
Stsc151085g00008 546 Pfam Protein kinase domain 66 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00008 546 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151085g00008 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 58 498 - -
Stsc151085g00008 546 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Stsc151085g00008 546 Gene3D Phosphorylase Kinase; domain 1 65 149 - -
Stsc151085g00008 546 Gene3D Transferase(Phosphotransferase) domain 1 150 330 - -
Stsc151085g00008 546 MobiDBLite consensus disorder prediction 13 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151085g00008 Stsc-Chr151085 58116 63849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151085g00008 1 546 EF-hand Containing Proteins AT1G18890 80.073 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc151085g00008 Pkinase 1.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151085g00008 K13412 - gmx:100809838 954.896