Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151085g00006 ATGGCTGTGCATGTACCCTTGAGTTCAGAGACCGACAAGATTGCATTGCTCGCTTTGACGGACAAGCTTACCAATGGTGACCCTCATGCTCTACCATCATGGAATCAGTCTCTCCATTTCTGTGCATGGGAGGGTGTTACATGCAATAATCGCCAAATGAGAGTCTCAGCCTTACAACTTCAAAATCAAGATTGGGGTGGCACTCTTGCATCATCCTTGGAAAATCTAACATCCTTAAGAGTGATCAATCTTACTAACATCAACTTGCATGGTGAGATTCCAAGAGAAGTTGGTCATTTAAAGAGGCTGCAGATTCTTGACTTGAGAACGAATAATCTTCGTGGTAAGGTTCCTATGGAGATGATAAATTGTTCAAGCCTTGAGGTAATTATATTGCAGTACAATAATCTAACTGGTAAAGTTCCTTCGTGGTTTGGTTCTTTGATGCAACTCACTCGACTAAGCCTTGCATACAACAGCTTTGTTGGTAGTATTCCGCCTTCTTTAGGAAATGTTTCATCGCTTGAGAAGTTGATACTTGGAAGGAACCATACCTCCAACTTCGGTAGTAATAGATTCGGAAGTGGAAGAGCTGATGATTTGGATTTTCTTTCCTCGTTAGAGAATTGTACTCAACTGCAAGTACTTGGCATTGATAACAATTATTTAGGCGGTCTATTGACAGAAGATCTCATAGCCAACTTATCAAACAGTCTTGTTTTGCTTAGTATGGGGTCCAATCAAATATCTGGAAGGATATTTGAAGGAATTAGAAAATTAATCAACTTACAATTACTTGGCATGGAGAACAATTCTCTTGAGGGAACAATTCCACATTTAATTGGAAAGCTCAAGAATCTGGTACAATTGACGTTAGGGGGAAATAAGTTGTTTGGCAACATTCCTCTTGTCGTTGGTAACCTTAATATGTTGTCTAAACTTGATCTGAGCTCAAATAAATTTGAAGGATTCATTCCTTTTACTCTTGTAAATTGCACCAAGATGGAGAGATTCTTTGCTCATGATAACAACTTAAGTGGTAATATACCAAATCAATTATTTGGCTACCAACGAGGTTTAATAGAGTTGTCCCTAGACTCCAACTCCTTTACTGGTCCCATTCCTTCTAATCTTTGTAAATTGAACCATCTTTGCATCTTGCATTTACAAGATAACAAGTTGATTGGTGAGATTCCCATGGAACTTAGTGGTTGTTCTGCTCTAACAGAGCTCATACTAGAAAGAAACTCATTTCATGGAAATATACCTTCATTCTTGGGATCTCTACTATCCCTTGAAATATTAGACCTTTCTAGTAACAACTTCTCAAACACAATTCCGCATGAACTTGTGAATCTCACTCTATTGAGTTCCTTGAATTTATCTTTCAACCATCTCTCTGGTGAAGTCCCGGTAGAGGAGTATTTAAAAACATCACAGCAATATCACTCACTGGAAACAATCATCTTTGCGTATGGCTATGTGAAGGTTTTTTATGGAGAGCTACAGCAAGCTACGTATGGATTTTCTTCGTCCAATTTAGTTGGCACAGGAAGCTCTGGCTTTGTATATAGAGGAACCCTTGTCCATTTTAAGAGACCTGTTGCTGTGAAGGTGTTGAATCTTCAAAGACGTGGGGCGTCAAAGAGTTTTGTGGCTGAATGCAGAGCTCTTGGAAAAATCATGCACAGAAACCTTCTCAGCATACTTACTTATTGTTCAAGCGTTGATTACAAAGGGAATGATTTCAAGGCCATAGCTTTCGACTTTGTAACATTCCACATTTTGGAGCCGCCGCCGTCAAGCTCTGTGTCACCATCGGGCCATGGTGTGCCATTCTACCATGCTCATCACGCCGCCGTGAACAGAGGAAGAGAGAGACAGAACGACGGACAGAGGAGCTGTCCCGTCGCCGTCGAGCCTTGGTGCACCGCCGCCGCCTTGATCTGTTACCTCCACCACTGTCTATGCGACGTCGTTGTCTCACAGCGGAGTTGCTTCGTCGTCGCCGGAAGTGAAGACACCACTATCTTGAAGCTTTTGCTCTTTCACTGCCAAGCCTAG 2064 0.4152 MAVHVPLSSETDKIALLALTDKLTNGDPHALPSWNQSLHFCAWEGVTCNNRQMRVSALQLQNQDWGGTLASSLENLTSLRVINLTNINLHGEIPREVGHLKRLQILDLRTNNLRGKVPMEMINCSSLEVIILQYNNLTGKVPSWFGSLMQLTRLSLAYNSFVGSIPPSLGNVSSLEKLILGRNHTSNFGSNRFGSGRADDLDFLSSLENCTQLQVLGIDNNYLGGLLTEDLIANLSNSLVLLSMGSNQISGRIFEGIRKLINLQLLGMENNSLEGTIPHLIGKLKNLVQLTLGGNKLFGNIPLVVGNLNMLSKLDLSSNKFEGFIPFTLVNCTKMERFFAHDNNLSGNIPNQLFGYQRGLIELSLDSNSFTGPIPSNLCKLNHLCILHLQDNKLIGEIPMELSGCSALTELILERNSFHGNIPSFLGSLLSLEILDLSSNNFSNTIPHELVNLTLLSSLNLSFNHLSGEVPVEEYLKTSQQYHSLETIIFAYGYVKVFYGELQQATYGFSSSNLVGTGSSGFVYRGTLVHFKRPVAVKVLNLQRRGASKSFVAECRALGKIMHRNLLSILTYCSSVDYKGNDFKAIAFDFVTFHILEPPPSSSVSPSGHGVPFYHAHHAAVNRGRERQNDGQRSCPVAVEPWCTAAALICYLHHCLCDVVVSQRSCFVVAGSEDTTILKLLLFHCQA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151085g00006 687 Gene3D Ribonuclease Inhibitor 7 198 IPR032675 -
Stsc151085g00006 687 ProSitePatterns Protein kinases ATP-binding region signature. 515 538 IPR017441 GO:0005524
Stsc151085g00006 687 PANTHER OS04G0122200 PROTEIN 20 591 - -
Stsc151085g00006 687 Gene3D Phosphorylase Kinase; domain 1 492 580 - -
Stsc151085g00006 687 Gene3D Ribonuclease Inhibitor 200 487 IPR032675 -
Stsc151085g00006 687 Pfam Leucine rich repeat 407 466 IPR001611 GO:0005515
Stsc151085g00006 687 Pfam Leucine rich repeat 126 184 IPR001611 GO:0005515
Stsc151085g00006 687 SUPERFAMILY L domain-like 236 481 - -
Stsc151085g00006 687 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 206 486 - -
Stsc151085g00006 687 SUPERFAMILY Protein kinase-like (PK-like) 490 584 IPR011009 -
Stsc151085g00006 687 FunFam Leucine-rich repeat receptor-like protein kinase 9 167 - -
Stsc151085g00006 687 Pfam Leucine rich repeat N-terminal domain 10 49 IPR013210 -
Stsc151085g00006 687 SUPERFAMILY RNI-like 58 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151085g00006 Stsc-Chr151085 39570 45647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151085g00006 58 591 Receptor kinase-like Gene Family AT3G47090 34.783 1.47e-87 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc151085g00006 LRR_8 8.9e-07 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151085g00006 - - mtr:11438431 461.07