Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151084g00023 ATGATATCTGAGATGAGGCCGAATCAATCTCCACCGCCCAACGCCAACAACAACCATCACCACCAAAACAACAACAGCAAGGACCGCCGCCGCCGCAAGGACCTTACCCTGCCACTCCCGCAGCGAGACACCAACCTCGCCGTGCCCCTCCCCCTCCCTCCTACCTCGGCCCCCAGCTCCGGACCAAGCGGCCACCAGTTCATCCCCTTCCCTGAGCTGGAGCGGCTCAACCGCATCGGGAGCGGCAGCGGCGGCACCGTGTACAAGGTCCTCCACCGCACAACGAACCGTGTTTATGCCCTGAAAGTGATCTACGGTCACCACGAGGATTCGGTGCGTCGGCAGATCCACCGTGAGATCCAGATCCTCCGAGACGTGGACGATCCGAACGTGGTGAAGTGCCACGATATGTACGACCACAACGGCGAGATCCAGGTGCTTCTGGAGTTCATGGACGAAGGGTCGTTGGAAGGGAAACACATCCCTCAGGAGAATCACCTGGCGGATCTGGCAAGGCAGATCCTGAGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTGCACCGGGACATAAAGCCGTCGAACCTGCTGGTGAACTCAAGGAGGCAGGTGAAGATCGCTGACTTTGGGGTTGGGAGGATCCTGAACCAGACGATGGATCCGTGCAACTCATCAGTGGGGACGATCGCGTACATGTCGCCGGAGAGGATCAACACGGACATCAATGACGGACAGTACGACGCGTACGCGGGAGACATATGGAGCCTGGGAGTGAGCATTTTGGAGTTCTACATGGGCAGGTTCCCGTTCGCCGTTGGGAGGCAGGGTGACTGGGCGAGCTTGATGTGTGCTATTTGTATGTCTCAGCCACCGGAGGCCCCTCACACTGCCTCCCCTGATTTTAGGGATTTCGTTTCTCGCTGTCTCCAGAGGGATCCTTCTAGAAGGTGGACCGCTTCCAGGCTTCTCTCTCACCCCTTCATTACCCATGGCTCCCCTCACCAGACTCAGATTTCTCACAATCTCCATCAGCTCCTCCCTCCTCCCCCCAGACCCCTTCCTTCTTAG 1068 0.589 MISEMRPNQSPPPNANNNHHHQNNNSKDRRRRKDLTLPLPQRDTNLAVPLPLPPTSAPSSGPSGHQFIPFPELERLNRIGSGSGGTVYKVLHRTTNRVYALKVIYGHHEDSVRRQIHREIQILRDVDDPNVVKCHDMYDHNGEIQVLLEFMDEGSLEGKHIPQENHLADLARQILRGLAYLHRRHIVHRDIKPSNLLVNSRRQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPHTASPDFRDFVSRCLQRDPSRRWTASRLLSHPFITHGSPHQTQISHNLHQLLPPPPRPLPS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151084g00023 355 MobiDBLite consensus disorder prediction 1 63 - -
Stsc151084g00023 355 FunFam Mitogen-activated protein kinase 2 153 340 - -
Stsc151084g00023 355 CDD PKc_MAPKK_plant_like 72 330 - -
Stsc151084g00023 355 Gene3D Transferase(Phosphotransferase) domain 1 154 344 - -
Stsc151084g00023 355 Gene3D Phosphorylase Kinase; domain 1 64 152 - -
Stsc151084g00023 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Stsc151084g00023 355 SUPERFAMILY Protein kinase-like (PK-like) 72 350 IPR011009 -
Stsc151084g00023 355 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151084g00023 355 SMART serkin_6 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151084g00023 355 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 13 330 - -
Stsc151084g00023 355 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Stsc151084g00023 355 ProSiteProfiles Protein kinase domain profile. 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151084g00023 355 Pfam Protein kinase domain 74 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151084g00023 Stsc-Chr151084 100246 101313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151084g00023 5 344 MAP Kinase Kinase Gene Family AT1G51660 68.715 3.81e-168 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Stsc151084g00023 Pkinase 6.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151084g00023 K13413 - gmx:100786390 544.273