Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151084g00022 ATGGCTATTGGCAAAGAAACAATGCAAGAGAAGAAGAAGGAGGAGTTCATCTTCAAGTCAAGGCTGCCAGACATCTACATCCCCAACCACCTTCCCCTCCATTCTTACATCTTTCAAGACCTTGACAACTTCGCCACCCATCCATGCCTCATCAATGCCCCAACCGGAGAGGTTTTCACCTACTCCGACGTCCACCTCAAGGCTAGGAGAGTCGCCTCTGGCCTCAACAAACTCGGGATCCGCCAGGGTGACGTCATCATGATCCTCCTCCCCAACTGTCCCCAATTCGTGTTCTCCTTCCTGGGCGCATCCTTCCGGGGTGCCATCGCCACCGCCGCCAACCCGTTCTTCACGCCGGCCGAGATAGCAAAGCAGGCGAAGGCGTCCAACGCGAGGCTGCTGGTAACGCAGTCAAGTTACTACGAGAAGGTGAAGGAGCTGGACGGGCACCTCAGCCTGGTGTTCGTGGACACTCCCCCGGAGAAGCACGTGCATTTCTCGGAGCTGGAAGAGGCGGATGAGGGGGAGATCCCGGAGGTGAAGATCAGCCCAGAGGACGTGGTGGCTCTGCCGTACTCGTCGGGAACGACGGGGCTGCCGAAAGGTGTGATGCTGAGTCACAAGGGGTTGGTGACGAGCGTGGGGCAGCAGGTGGATGGAGATAACCCAAACCTTTATTATCACAGCGCTGATGTCATCATGTGTGTGCTTCCCATGTTCCACATTTACTCCCTCAACTCTGTCCTCCTCTGTGGACTCAGGGCCAAGGCTTCCATCATCCTCATGCCTAAATTCGACATCACTGCTTTTCTTGGATTAGTGGACAAGCATCGGGTCACCATATGCCCCGTCGTGCCCCCCATCATTCTTGCCATCGCCAAGTGCCCCGATCTTGGTAAGTACGATCTTTCTTCCATCAGAGTCCTTAAATCAGGTGGGGCTCCCCTTGGCAAGGACCTTGAACACACTGTCCGCCTCAAATTCCCCAACGCCAAGCTTGGACAGGGATATGGGATGACAGAGGCGGGTCCAGTGTTAACAATGTGTTTAACATTCGCTAAAGAAGCCATTGACGGAAAACCAGGTGCATGCGGCACCGTTGTCAGAAACGCAGAGATGAAGATTGTTGATCCTGAAACGGAAGATTCTCTGCCCAGAAACCAACCTGGTGAAATCTGTATTAGAGGCCATCAGATCATGAAAGGTTATCTAAACGATCCGGAGTCAACAGCGAGAACAATAGACAAGGAAGGGTGGTTGCACACGGGTGACATTGGTTACATCGACGATGATGATGAGCTCTTCATCGTTGATAGGCTCAAAGAATTGATCAAATACAAAGGCTTCCAAGTTGCTCCTGCTGAACTGGAAGCCCTCCTTCTCTCCCATCCTAAAATTTCTGATGCTGCTGTAGTCCCGATGAAGGACGAAGCAGCTGGGGAGGTGCCAGTTGCATTTGTGGTCTCAGCAAATGGCCACACTGACACAACTGAAGATGAGATTAAGCAATTCGTCTCCAAACAGGTGGTGTTTTACAAGAGAATTAACCGAGTATTCTTCGTGGATGCCATTCCCAAGTCACCCTCTGGCAAAATATTACGAAAGGATCTAAGGGCTAGGCTCGCACTCCCTCTTACAAATTAA 1644 0.5201 MAIGKETMQEKKKEEFIFKSRLPDIYIPNHLPLHSYIFQDLDNFATHPCLINAPTGEVFTYSDVHLKARRVASGLNKLGIRQGDVIMILLPNCPQFVFSFLGASFRGAIATAANPFFTPAEIAKQAKASNARLLVTQSSYYEKVKELDGHLSLVFVDTPPEKHVHFSELEEADEGEIPEVKISPEDVVALPYSSGTTGLPKGVMLSHKGLVTSVGQQVDGDNPNLYYHSADVIMCVLPMFHIYSLNSVLLCGLRAKASIILMPKFDITAFLGLVDKHRVTICPVVPPIILAIAKCPDLGKYDLSSIRVLKSGGAPLGKDLEHTVRLKFPNAKLGQGYGMTEAGPVLTMCLTFAKEAIDGKPGACGTVVRNAEMKIVDPETEDSLPRNQPGEICIRGHQIMKGYLNDPESTARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDAAVVPMKDEAAGEVPVAFVVSANGHTDTTEDEIKQFVSKQVVFYKRINRVFFVDAIPKSPSGKILRKDLRARLALPLTN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151084g00022 547 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Stsc151084g00022 547 SUPERFAMILY Acetyl-CoA synthetase-like 26 541 - -
Stsc151084g00022 547 Gene3D - 10 440 IPR042099 -
Stsc151084g00022 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 19 441 - -
Stsc151084g00022 547 Pfam AMP-binding enzyme C-terminal domain 455 531 IPR025110 -
Stsc151084g00022 547 CDD 4CL 27 537 - -
Stsc151084g00022 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 539 - -
Stsc151084g00022 547 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Stsc151084g00022 547 Gene3D - 441 543 IPR045851 -
Stsc151084g00022 547 Pfam AMP-binding enzyme 43 446 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151084g00022 Stsc-Chr151084 94504 97472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151084g00022 6 509 Monolignol Biosynthesis Gene Families AT1G51680 69.126 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151084g00022 K01904 - qsa:O6P43_027979 850.506