LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151084g00020	ATGAAGGATAAAGAAAAGGACAAGGAAAAAGAGGCGGAGAAGAAGAAGTACCCTATCGGTGCCGAGCATTACGATCTCTACGAGGAGATTGGACACGGTGTCAGTGCCGCCGTCCACCGTGCGCTCTGCATCCCCCTCAACGAGGTCATCGCCATCAAGATCCTCGACTTCGAACGCGACAACTGCGATCTGAACAATGTTTCACGCGAAGCACAGACGATGGTGCTGGTGGACCACCCAAACGTGCTGAAATCGCACTGCTCCTTCGTCAACGAGCACAGCCTGTGGGTTGTGATGCCGTACATGGCGGGGGGATCGTGCCTCCACATCCTCAAGGCCGCGCACCCCGACGGATTCGAGGAGGTTGTGATTGCCACCATCCTTCGCGAGGTCCTCAAAGGTTTAGAGTACCTTCACCACCACGGGCACATCCACAGGGACGTCAAGTCCGGCAACATTCTCATCGATTCCCGAGGCGCCATCAAGCTCGGCGACTTCGGCGTCTCTGCCTGTCTCTTTGACTCCGGTGATAGGCAGCGCACCAGGAATACTTTTGTTGGAACACCTTGCTGGATGGCACCCGAAGTAATGGAGCAGCTGCATGGTTATAACTTCAAAGCTGACATTTGGTCATTTGGCATAACTGCACTAGAGCTTGCCCACGGTCATGCTCCTTTCTCAAAGTTTCCACCGATGAAGGTACTACTTATGACTTTGCAAAATGCACCCCCAGGCCTTGACTACGAGAGGGATAGGAAGTTCTCTAAGTCATTTAAGCAGATGATTGCTAGTTGCTTAGTGAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTGAAGCATTCCTTCTTCAAGCAGGCTCGTTCCAATGATTATATTTCGCGAACACTTTTGGAGGGGCTTCCTGCTTTAGGTGATCGCATGCAGGCCCTAAAGAGAAAAGATGAAGATATGCTTGCACAAAAGAAAATGCCCGATGGGGAGATGGAGGAACTATCACAGAATGAATACAAACGGGGAATTAGTGGCTGGAACTTCAATCTTGATGATATGAAGGCTCAGGCTTCATTGATCCATGATTTTGATGATGCTATATCAGATATCAATCATGTAGCAAGTTCAGCTTCTTTATCTTCTCTTGATGTACAAGATAAGCCAAGTGCAAGTCATAATCCTTCTCGAAGTGCTGATCTGGAAGATATTGATGAGATACAAAATCAATCAGCTTCTGTTCCAGCAATTGATTCTACAGTGAATGATGTAAAGATTAAGTTTGAAAAAAATGATGATGACTCTAGTATTACCAGTTCAAGCCATGAACAAAGCATTTCACAAGCTTCTCCATCCTGTCTTGATGATCGTGTGGACCATAATGTGGGAGAAAAATCTGATGTGGAAAATGGTGGAAGATCTGTAGAGGGTATGGCTATCCATTCGTTTCATAGAAGAGGATCTTCCTCTAGCATTTTACCTGAAGTAACTCTTCCACCGGTTCGACCAGAAAGTGAGAAGGCAACCTATCTGCTCCAGAGCACCTCAAGTGGCAACACAAATTCACAGTCAGGAGAGGACGTTCTTACTGAACTTCCTTCTAAAGTCTCAAAATCATCAGCTAATTCTGAAGAGACTGATGAGAAAGCAAAGATACCAGTTGTTCAGCAGAGAGGACGTTTTAAGGTTACATCTGAGAATGTTGATCCAGAAAAGGTGGCCCCTACTCCTGTACTGCAAAAGAGTCACAGTATGCAGATCATTAGCCAGCATAGTGCTCCTGCTCCTCTGCCTTCACCTGTACCATTACTGCCAGCATCTGATGCTGTTATACCATCAAATCTTTCTGGCTGTTCTCTTTTCCCAGTGTTGCACTCTGTGCTGCAGACAAATATTCTTCAAAGGGAGAGCATTTTAAGTTTAATGAAGCAAATCAGTGCCAGTGACACCACAGCTGATGCCACATGTATGCCGGCACAAATTGCAGCTGTTGAGAAATCTTTGCTTGAAGCAGCTCACGATAGGGAGAAAGAGTTACTCCATGAGATAACTGAGTTGCAGTGGAGGCTGATATGTACCCAAGAGGAGCTTCAAAAATTGAAGACAGATAATGCTCAGGTATGA	2118	0.4622	MKDKEKDKEKEAEKKKYPIGAEHYDLYEEIGHGVSAAVHRALCIPLNEVIAIKILDFERDNCDLNNVSREAQTMVLVDHPNVLKSHCSFVNEHSLWVVMPYMAGGSCLHILKAAHPDGFEEVVIATILREVLKGLEYLHHHGHIHRDVKSGNILIDSRGAIKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYISRTLLEGLPALGDRMQALKRKDEDMLAQKKMPDGEMEELSQNEYKRGISGWNFNLDDMKAQASLIHDFDDAISDINHVASSASLSSLDVQDKPSASHNPSRSADLEDIDEIQNQSASVPAIDSTVNDVKIKFEKNDDDSSITSSSHEQSISQASPSCLDDRVDHNVGEKSDVENGGRSVEGMAIHSFHRRGSSSSILPEVTLPPVRPESEKATYLLQSTSSGNTNSQSGEDVLTELPSKVSKSSANSEETDEKAKIPVVQQRGRFKVTSENVDPEKVAPTPVLQKSHSMQIISQHSAPAPLPSPVPLLPASDAVIPSNLSGCSLFPVLHSVLQTNILQRESILSLMKQISASDTTADATCMPAQIAAVEKSLLEAAHDREKELLHEITELQWRLICTQEELQKLKTDNAQV	705

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151084g00020	705	ProSitePatterns	Protein kinases ATP-binding region signature.	30	53	IPR017441	GO:0005524
	Stsc151084g00020	705	ProSiteProfiles	Protein kinase domain profile.	24	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151084g00020	705	Pfam	Protein kinase domain	24	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	378	398	-	-
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	430	472	-	-
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	378	395	-	-
	Stsc151084g00020	705	SMART	serkin_6	24	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151084g00020	705	CDD	STKc_OSR1_SPAK	22	285	-	-
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	512	538	-	-
	Stsc151084g00020	705	Gene3D	Phosphorylase Kinase; domain 1	12	100	-	-
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	436	452	-	-
	Stsc151084g00020	705	Coils	Coil	681	701	-	-
	Stsc151084g00020	705	FunFam	Serine/threonine-protein kinase BLUS1	13	101	-	-
	Stsc151084g00020	705	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	105	338	-	-
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	455	469	-	-
	Stsc151084g00020	705	Gene3D	Transferase(Phosphotransferase) domain 1	105	338	-	-
	Stsc151084g00020	705	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	13	700	IPR047173	GO:0043539
	Stsc151084g00020	705	MobiDBLite	consensus disorder prediction	512	549	-	-
	Stsc151084g00020	705	SUPERFAMILY	Protein kinase-like (PK-like)	22	286	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151084g00020	Stsc-Chr151084	78958	85263	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151084g00020	13	687	MAP Kinase Kinase Kinase Kinase	AT1G79640	63.504	0.0	850

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Stsc151084g00020		Pkinase	1.2e-58	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151084g00020	K08835		-	gmx:100819537	1118.99