Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151084g00019 ATGAAACTCACTGTTAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCATCCGACACTATTATGGCTGTCAAGAAGAATATAGAAGATGTGCAAGGCAAATTTAATTACCCATGTGGACAACAGTTGCTTATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGAGAACAAGGTCTCTGAGGATGGATTTCTTGTTGTTATGCTTAGCAAGAGTAAAACATTGGGTTCGGCAGGGACTTCATCTGCCCAGCCTGCCAGCAATCCACCTGCAGCTGTATCAACCTCAAATTCCACGCCTGCTCCTGAACCTCCTGCTCCTGCCCAAACTCAGGATGCAAACAACAGTACATCTGGCCAAGCTGTCACAACTACAAATACAAATGTATCTGCAGTTACTTATGGCCAGGCTGTTTCAAATTTAGTTGGTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGATACAGTTACTCGTGCTCTTCGGGCAGCTTACAACAATCCAGAGCGTGCTATAGACTACTTGTACTCTGGTATCCCTGAAGCAGCAGAAGTTGCTGTACCAGTTCCTCACTTCCCAGGTAGTCAGACAACTGAAACAGCTGGGGTCACTGCTGGAGCAGTTCCTGGACTACCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCCGGTGCTGGTCCTGGAGTAGGATCTCTTGAATTCCTCAGAAACAATGCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCAAATCCACAAATTTTACAGCCTGTGCTTCAAGAACTTGGGAAGCAGAATCCCAATCTTTTAAGACTGATTCAAGAGCATCATGCTGAGTTTCTACAGTTGATAAACGAACCTGTTGAGGGTTCTGAAGGTGATATATTTGACCAGCCTGAGCAGGACATGCCACATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGCAAGGCTTGAGGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCGTTTTTGGCGTGTGACCGTGATGAGCAATTGGCAGCCAACTACTTATTGGAGAATGCTGGAGATTTTGAGGATTAG 1128 0.4504 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKFNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTLGSAGTSSAQPASNPPAAVSTSNSTPAPEPPAPAQTQDANNSTSGQAVTTTNTNVSAVTYGQAVSNLVGGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPHFPGSQTTETAGVTAGAVPGLPNSSPLNMFPQETISGAGPGVGSLEFLRNNAQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIARLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151084g00019 375 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 329 369 IPR015940 -
Stsc151084g00019 375 MobiDBLite consensus disorder prediction 113 127 - -
Stsc151084g00019 375 MobiDBLite consensus disorder prediction 81 104 - -
Stsc151084g00019 375 Gene3D - 322 370 - -
Stsc151084g00019 375 SUPERFAMILY UBA-like 310 372 IPR009060 GO:0005515
Stsc151084g00019 375 SMART CBM 248 291 IPR006636 -
Stsc151084g00019 375 FunFam UV excision repair protein RAD23 B 240 306 - -
Stsc151084g00019 375 CDD Ubl_Rad23 1 74 - -
Stsc151084g00019 375 SMART uba_6 331 368 IPR015940 -
Stsc151084g00019 375 SMART uba_6 152 192 IPR015940 -
Stsc151084g00019 375 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 150 193 IPR015940 -
Stsc151084g00019 375 Pfam UBA/TS-N domain 331 366 IPR015940 -
Stsc151084g00019 375 Pfam UBA/TS-N domain 152 190 IPR015940 -
Stsc151084g00019 375 NCBIfam UV excision repair protein Rad23 1 374 IPR004806 GO:0006289
Stsc151084g00019 375 MobiDBLite consensus disorder prediction 81 127 - -
Stsc151084g00019 375 SUPERFAMILY XPC-binding domain 248 313 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc151084g00019 375 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Stsc151084g00019 375 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 364 - -
Stsc151084g00019 375 CDD UBA1_Rad23_plant 146 195 - -
Stsc151084g00019 375 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Stsc151084g00019 375 FunFam UV excision repair protein RAD23 homolog 145 195 - -
Stsc151084g00019 375 SUPERFAMILY UBA-like 147 200 IPR009060 GO:0005515
Stsc151084g00019 375 Gene3D - 145 195 - -
Stsc151084g00019 375 Gene3D - 240 306 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc151084g00019 375 Pfam XPC-binding domain 250 305 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc151084g00019 375 FunFam UV excision repair protein RAD23 1 80 - -
Stsc151084g00019 375 FunFam UV excision repair protein RAD23 homolog 322 370 - -
Stsc151084g00019 375 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Stsc151084g00019 375 PRINTS DNA repair protein Rad23 signature 276 298 IPR004806 GO:0006289
Stsc151084g00019 375 PRINTS DNA repair protein Rad23 signature 325 341 IPR004806 GO:0006289
Stsc151084g00019 375 PRINTS DNA repair protein Rad23 signature 342 356 IPR004806 GO:0006289
Stsc151084g00019 375 PRINTS DNA repair protein Rad23 signature 357 372 IPR004806 GO:0006289
Stsc151084g00019 375 Gene3D - 1 80 - -
Stsc151084g00019 375 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151084g00019 Stsc-Chr151084 72796 77382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151084g00019 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 2.48e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151084g00019 K10839 - gmx:100819019 600.512