Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151083g00014 ATGTCCAATCCCAAAACACAGTTTCTGTCCCAAGATCCGAATTGTCAGGATCCGAATTCCAATTCGGATCCACACCTCCCTCTCCGCAACCTCGCACAGATCCGAACCGGACTCGATTCTCTCCATCGCTTTTTATCGGAATCCATCGCCTCCAACAACCCTCTCTCCGACCACCAATCCGCCGCCGTTTCCGATCAAATCGCCTCCGCCATCCACCAAACCATCGCGAACGCCTCCGCCCTCGTCTCCTACTCCAAACCTTTCCACCCGCCGGATTCCACTCCCGCCGCCGCGCCGCCGTTACCTAGGGTTGGCCTAACCGCTGGCGTCGAGAAAATCAAACGCGCGTCAGATCTGAAAATCGAGCCGCCGGACAATGACACCGCCACCGATGAGTTCGCCGATGGCGGCAGCGACGACATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACGTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAACCTCCGTATGCACATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCGCTCGCGAAGCCGGAGAATTCTTCGTCCTCCGGCGGCGCCGCCGTGCAGCGGCGATACTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCGGCGGTTCAGGGCGCTGAAATCGATGGTGTGTGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTACTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTCAAGAGCCATATGAAGAACTGCGGTGAATCCAAGTGGAAGTGCTCTTGTGGGACCACTTTCTCAAGGAAGGATAAACTTTTTGGGCACATTGCTTTATTTGAAGGGCATGTACCATTGCTCGAAGAGGATAATAATAATAATAAGGGGAAGCAAGTGCAGGAGGATTATTATGATGATAATGAGGATCAAGCTGAGTTGAGTGCTTGTTTTTTGGATGATAATGATCATGATAATGATAATGATGGTGATTTGCCTGATGGGTTTTTTGATGATTTGGATGATTTGAGCTCTTTAGGGTTTCCCTTGATTTAA 1089 0.5317 MSNPKTQFLSQDPNCQDPNSNSDPHLPLRNLAQIRTGLDSLHRFLSESIASNNPLSDHQSAAVSDQIASAIHQTIANASALVSYSKPFHPPDSTPAAAPPLPRVGLTAGVEKIKRASDLKIEPPDNDTATDEFADGGSDDIVELDAVEILAEHVHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENSSSSGGAAVQRRYSCPFEGCNRNKNHRRFRALKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEEDNNNNKGKQVQEDYYDDNEDQAELSACFLDDNDHDNDNDGDLPDGFFDDLDDLSSLGFPLI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151083g00014 362 SMART c2h2final6 155 177 IPR013087 -
Stsc151083g00014 362 SMART c2h2final6 243 264 IPR013087 -
Stsc151083g00014 362 SMART c2h2final6 205 238 IPR013087 -
Stsc151083g00014 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Stsc151083g00014 362 Gene3D Classic Zinc Finger 154 177 - -
Stsc151083g00014 362 MobiDBLite consensus disorder prediction 1 27 - -
Stsc151083g00014 362 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Stsc151083g00014 362 SUPERFAMILY beta-beta-alpha zinc fingers 152 178 IPR036236 -
Stsc151083g00014 362 Gene3D Classic Zinc Finger 198 293 - -
Stsc151083g00014 362 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 124 322 IPR044300 GO:0010044|GO:0010447
Stsc151083g00014 362 FunFam Zinc finger 45-like 152 178 - -
Stsc151083g00014 362 Pfam Zinc finger, C2H2 type 156 177 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151083g00014 Stsc-Chr151083 138506 139594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151083g00014 125 299 C2H2 Transcription Factor Family AT1G34370 60.227 1.75e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151083g00014 zf-C2H2 0.00025 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151083g00014 - - cam:101491258 384.03