Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151083g00007 ATGAAACAAGTAGAAATGGAATTCATAGTGTTGTTTTTGCTATTGGCTAGTGTATGTTCTTCACAGCTTGATAATGATTCACAAGAGGAAGCCCTATATGCATTGAAGTTATCATTGAATGCTTCCAAAAATCAGCTTACTAACTGGAATAGAGACCAAGTTAGCCCGTGCACTTGGTCCAATGTTTACTGTGACCCAAGTGGCAATGTTTATCAAGTTTCACTAGCATTTATGGGATTTACAGGATACTTGACACCGCGAATAGGAGCACTAAAAGGTCTTCAAACTCTTGTTCTAAATGGGAATGGCATCACTGGAGGTATACCAAAAGAATTAGGAAACCTTACAAAATTGGTCAGATTGGATCTTCAAAACAACAGATTAACCGGTGAAATACCCTCTTCCCTTGGTAACCTTAAAAAGCTTCAGTTCTTAACATTGAGTCAAAACTACCTCAATGGGTCTATTCCTGAATCATTAGCCAATCTTCCAAGCCTGATCAATGTTCTTCTAGATTCAAATGATCTCAGTGGTCAGATTCCAGAAGGGTTATTCAATGTTTCGAAATACAATTTCACTGGAAATAAGTTGAATTGTGGCATGAATTATCATCAACTTTGTGCATCTGATATTGCTGATCAAGGTTTATCACATAAACCAAAAATCGGAATCGTTGTTGGAATAGTTTTAGGTTTAGTTGTTATTATTTCTCTTGGCAGTGTACTGTTCTTCTGGTGCAAGAGCTACAAGCGTGATGTTTACGTAGATGTTGCAGGCGAAGTTGATGGGCGAATTGCATTTGGTCAGCTGAAAAGATTTGCTTGGAGAGAACTGCAAATAGCTACAGACAACTTTAGTGAGAGAAATGTTTTAGGACAGGGAGGCTTTGGGAAGGTTTATAAAGGTATTCTACCTGATGGCACGAAAATTGCTGTTAAAAGGTTAACCGATTATGAAAGTCCTGGGGGAGATGCTGCTTTCCAGCGCGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTGATCGGGTTCTGTACCACTCCAACGGAGCGTCTATTAGTCTATCCCTTCATGCAGAACCTAAGTGTTGCCTACCGTCTTCGAGAACTGAAACCTGGGGAGGCTGTTTTGGATTGGCCTACGAGAAAACAAGTGGCTCTGGGAACAGCCCGAGGCCTAGAATATCTTCATGAGCAATGCAACCCAAAGATTATTCATCGGGATGTGAAGGCAGCAAATGTATTATTGGATGGAGACTTCGAGGCAGTTGTAGGAGACTTTGGTTTGGCAAAGTTAGTTGATGTTCGAAGGACTAATGTGACGACTCAAGTTCGTGGAACAATGGGCCACATAGCTCCTGAATATTTGTCCACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGAATAATGCTACTAGAGCTTGTTACCGGTCAACGCGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTCGAACGGGAGAAAAGACTAGATGCTATTGTTGACCGCAATTTGAAACAAAACTACAAAATAGAAGAAGTTGAGATGATTGTTCAAGTTGCATTACTCTGCACGCAAGCATCACCGGAGGACCGACCGGCAATGTCGGAGGTTGTGAGAATGCTGGACGGAGAAGGACTTGCCGAAAGGTGGGAGGAATGGCAGCACGTAGAGGTCAACCGGAGGCAGGATTATGAGAGACTACAAAGAAGATTGGGGTGGGGAGAAGATTCAATAAATAACCAAGATGCCATTGAGTTGTCAGGCGGAAGATGA 1827 0.4176 MKQVEMEFIVLFLLLASVCSSQLDNDSQEEALYALKLSLNASKNQLTNWNRDQVSPCTWSNVYCDPSGNVYQVSLAFMGFTGYLTPRIGALKGLQTLVLNGNGITGGIPKELGNLTKLVRLDLQNNRLTGEIPSSLGNLKKLQFLTLSQNYLNGSIPESLANLPSLINVLLDSNDLSGQIPEGLFNVSKYNFTGNKLNCGMNYHQLCASDIADQGLSHKPKIGIVVGIVLGLVVIISLGSVLFFWCKSYKRDVYVDVAGEVDGRIAFGQLKRFAWRELQIATDNFSERNVLGQGGFGKVYKGILPDGTKIAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKQVALGTARGLEYLHEQCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKQNYKIEEVEMIVQVALLCTQASPEDRPAMSEVVRMLDGEGLAERWEEWQHVEVNRRQDYERLQRRLGWGEDSINNQDAIELSGGR 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151083g00007 608 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151083g00007 608 SUPERFAMILY L domain-like 27 198 - -
Stsc151083g00007 608 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Stsc151083g00007 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Stsc151083g00007 608 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Stsc151083g00007 608 FunFam Somatic embryogenesis receptor kinase 1 254 361 - -
Stsc151083g00007 608 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Stsc151083g00007 608 FunFam Somatic embryogenesis receptor-like kinase 1 362 579 - -
Stsc151083g00007 608 Gene3D Ribonuclease Inhibitor 25 208 IPR032675 -
Stsc151083g00007 608 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Stsc151083g00007 608 Pfam Protein kinase domain 286 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151083g00007 608 SMART serkin_6 285 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151083g00007 608 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Stsc151083g00007 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 570 - -
Stsc151083g00007 608 SUPERFAMILY Protein kinase-like (PK-like) 267 559 IPR011009 -
Stsc151083g00007 608 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151083g00007 Stsc-Chr151083 59579 65216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151083g00007 1 608 Receptor kinase-like Gene Family AT5G10290 73.366 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc151083g00007 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151083g00007 - - gmx:100793416 985.326