Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151083g00004 ATGGCAATTTCACCTTTTGGTAGTACATTTGCAACTCAATGGGGAATTCGGCCTCAGGTTTTCGCGAGGTCCAGCTTTGTCGGCAAGAATGCATCATCCAGCCACAATGTTACAAGCAGGGTGAACTTTATAGCGGCCCCAACTTCAAGCTTTCTCTCTCAGGATTCCTCACGTGCACTATTTGACATGGGTTCATCTAAAACATATCATCGCCGAAGGGGTTCAAGGTTCATAGTTAGAGCAGATACAGATTACTATTCCGTCCTTGGTGTGTCAAGAAATGCCACTAAATCTGAAATTAAGAGCGCTTATCGGAAGCTTGCCCGGAATTATCATCCAGATGTGAATAAAGATCCTGGTGCAGAACAGAAATTTAAGGACATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCGATATATGACCAATATGGAGAGGCTGGGCTTAAAGGTTCAGGGATGGGCATGGGGGATTTCAGCAGTCCTTTTGATATTTTTGAAACACTTTTCGAGGGCATGGGGGGCATGGGTGGCATGGGTGGAAGAGGTCGGGTCGTCTCATCAACCAGGACCCCTTTAGGTATCTTTCAGCAGTCTATGACCTGCTCTTCCTGCAATGGAACCGGAGAAACCTCAACACCATGCAGCACATGCTCTGGGGACGGTCGTGTGAGGAAAACAAAGCGGATAAGTTTAAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGGAATGAAGGTAATGCTGGAAGACGCGGCGGTGCACCTGGGGACCTCTTTGTCGTTATCGAAGTTATTCCAGATCCTGTCCTCAAAAGAGATGACACCAACATTCTATACACCTGCAAGGTGTCTTACATTGATGCTATCTTGGGGACTACAATCAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAGTCCCGGCTGGGACTCAACCGGGCACGACGCTTGTTATGGCTCGGAAAGGTGTTCCACTTCTGAATAAGAGTAACATGAGGGGTGATCAATTGGTTCGCGTGCAAGTCGAAATCCCCAAGAAACTGAGCAGTGATGAGAGAAAACTTATTGAGGAACTTGCTGATTTGAGCAAAGGAAAGAGTAAAGCTGCTGCTAGTGGAAGTAGGAGATAA 1152 0.4653 MAISPFGSTFATQWGIRPQVFARSSFVGKNASSSHNVTSRVNFIAAPTSSFLSQDSSRALFDMGSSKTYHRRRGSRFIVRADTDYYSVLGVSRNATKSEIKSAYRKLARNYHPDVNKDPGAEQKFKDISNAYEVLSDDEKRSIYDQYGEAGLKGSGMGMGDFSSPFDIFETLFEGMGGMGGMGGRGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKVPAGTQPGTTLVMARKGVPLLNKSNMRGDQLVRVQVEIPKKLSSDERKLIEELADLSKGKSKAAASGSRR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151083g00004 383 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Stsc151083g00004 383 Gene3D DnaJ domain 81 182 IPR036869 -
Stsc151083g00004 383 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 183 228 IPR036410 -
Stsc151083g00004 383 SUPERFAMILY HSP40/DnaJ peptide-binding domain 215 284 IPR008971 GO:0006457|GO:0051082
Stsc151083g00004 383 FunFam Putative Mitochondrial DnaJ chaperone 213 267 - -
Stsc151083g00004 383 Gene3D - 183 225 - -
Stsc151083g00004 383 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 182 375 - -
Stsc151083g00004 383 CDD DnaJ 84 137 IPR001623 -
Stsc151083g00004 383 Hamap Chaperone protein DnaJ [dnaJ]. 81 375 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc151083g00004 383 SUPERFAMILY HSP40/DnaJ peptide-binding domain 277 363 IPR008971 GO:0006457|GO:0051082
Stsc151083g00004 383 CDD DnaJ_zf 188 225 IPR001305 GO:0031072|GO:0051082
Stsc151083g00004 383 Pfam DnaJ domain 84 145 IPR001623 -
Stsc151083g00004 383 CDD DnaJ_C 226 355 - -
Stsc151083g00004 383 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Stsc151083g00004 383 SMART dnaj_3 83 140 IPR001623 -
Stsc151083g00004 383 SUPERFAMILY Chaperone J-domain 81 186 IPR036869 -
Stsc151083g00004 383 Gene3D - 226 267 - -
Stsc151083g00004 383 Gene3D - 272 382 - -
Stsc151083g00004 383 PRINTS DnaJ domain signature 140 159 IPR001623 -
Stsc151083g00004 383 PRINTS DnaJ domain signature 86 104 IPR001623 -
Stsc151083g00004 383 PRINTS DnaJ domain signature 104 119 IPR001623 -
Stsc151083g00004 383 PRINTS DnaJ domain signature 120 140 IPR001623 -
Stsc151083g00004 383 FunFam Chaperone protein dnaJ 1, mitochondrial 272 379 - -
Stsc151083g00004 383 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Stsc151083g00004 383 Pfam DnaJ C terminal domain 200 352 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151083g00004 Stsc-Chr151083 21366 24750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151083g00004 85 147 C2H2 Transcription Factor Family AT1G74250 42.029 1.14e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151083g00004 K03686 - csv:101221606 503.056