Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151081g00003 ATGTTCTTCCTTGCTTCCATGTACTTCTCTTTTCCCAAAGGTCATGGTGGTCCAGGTAAGTGCTTTGAACTTGGTAAGCACTTGTGGATTTGTTGTGATGATGATAAAGATGGAGAACATGAGTTTTTGAATTGTGATTCTGATTATTATGAGAGGGCATTTTTGGCAAAATCAGCTGGGATTAAAACTGTTGTTTTGATTCCTACTGAATTAGGTGTTGTTGAACTAGGTTCTGTGAGGATTGTTGATGAGAATTTCGATTTGTTAAAAAATGTGTACTCTATTTTTTCTTCTTCCTTTGCTCATTCATCATCATCATTCAATGGTGTTGTAAATGTGAGGGGAAATGAAAAAAACAAATTTTTCTGTGGTATGAATATTGGGGATAGAGATAGAGATAGAGATGGAGATATTAAGATTATGAATCATAGACTTGAGAGTGTTTTGGTTCCAAAGATTTTTGGGAAGGAATTGAATGCTGTAAATTTGAATTCCCGGGAAAAGAGTTTTAGGGAGAAACTTGCAATTAGGAAAATTGAAGAGAGGAAATCATGGAGTAGTTACCCTAATGGGAGTAATGAAATTCGATTTTCAAAGAAGGGTAGGGACGGTGTTAATGGTTTAAGTTTGGCAGGTAATCAAGGTTTAAGACAGGGCTGCTGTCCAGGAGAAATTTTCGCTCCCATTCCTCGATCCTACCATAGTAACATGACAAAACAAGCAGATTGTGCCGTGATGAGGAAGGATTTCTTGCTCAAAAAGTTTCAACAGCTGCCACAAGGGAAGGTGCCAATGCACATTGATTTTGGAGTAGGAACAATAATTGGCGAATGTGAGGTTTTAGACAATAACTGGTCATGCAAAGAAGAGAAGTCGGGTGTGACACAAGAAAGGAGGTCTAGGAAGCGAGGCAGAAAGCCTGCTAATGGTAGGGAGGAGCCCCTCAATCATGTGGAGGCAGAGAGACAGAGGCGCGAGAAACTTAACCAGCGATTCTATGCATTGCGTGCGGTTGTGCCTAATATCTCGAAGATGGATAAGGCATCATTACTAGGAGATGCTATTGCTCACATCAATGAATTGCAAGCTAAATTGAAGGCCTTGGAATCCAAAAAATCAACTTTTGGAAACACTTCCAAGGTTGGTTTATCAGGATCTGAGGTTGATAGTCAAGAAAGAACTTATTCTTCTGAAGTGGATATTGAAGTTAATCAAGACGTTGTGACTGTGAAAGTGAGTTGTCCCATTGATCTTCACCCTGCATCAAAATTGTTCCAAGCATTAAAAGATTCAGATATGAGTGTTCTTGAGTCCAAACTTGATGCTACAAAGGATCAAGTCTTTCACACATTTGTGATTAAATCTCATGATTCGGAACAACTCACGAAGGAGAAGGTGATCGCAGCAGTTTTTGATAAATCCAACTCAAGAAAATCCGGAATAGCATGA 1449 0.3913 MFFLASMYFSFPKGHGGPGKCFELGKHLWICCDDDKDGEHEFLNCDSDYYERAFLAKSAGIKTVVLIPTELGVVELGSVRIVDENFDLLKNVYSIFSSSFAHSSSSFNGVVNVRGNEKNKFFCGMNIGDRDRDRDGDIKIMNHRLESVLVPKIFGKELNAVNLNSREKSFREKLAIRKIEERKSWSSYPNGSNEIRFSKKGRDGVNGLSLAGNQGLRQGCCPGEIFAPIPRSYHSNMTKQADCAVMRKDFLLKKFQQLPQGKVPMHIDFGVGTIIGECEVLDNNWSCKEEKSGVTQERRSRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAHINELQAKLKALESKKSTFGNTSKVGLSGSEVDSQERTYSSEVDIEVNQDVVTVKVSCPIDLHPASKLFQALKDSDMSVLESKLDATKDQVFHTFVIKSHDSEQLTKEKVIAAVFDKSNSRKSGIA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151081g00003 482 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Stsc151081g00003 482 MobiDBLite consensus disorder prediction 289 323 - -
Stsc151081g00003 482 MobiDBLite consensus disorder prediction 306 323 - -
Stsc151081g00003 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 374 IPR036638 GO:0046983
Stsc151081g00003 482 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 96 IPR025610 -
Stsc151081g00003 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Stsc151081g00003 482 PANTHER MYC 1 469 IPR045084 GO:0003700|GO:0006355
Stsc151081g00003 482 Coils Coil 351 378 - -
Stsc151081g00003 482 Gene3D - 297 376 IPR036638 GO:0046983
Stsc151081g00003 482 CDD bHLH_AtAIB_like 309 372 - -
Stsc151081g00003 482 SMART finulus 318 367 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151081g00003 Stsc-Chr151081 28127 29847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151081g00003 1 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 38.748 9.22e-96 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151081g00003 bHLH-MYC_N 7.2e-24 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151081g00003 - - aip:107623716 656.366