Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151080g00004 ATGGAAACACCAAACATTTTTCACAACAGTTTCTGTTCTCAATTCACCTCCGACGATGCCGGCGACAATAACAATAACACTGCTGCTGCTGCAAGCACGGGGGACAATTTCATTGTTGAGGATCTTCTTGACTTTTCCAACGATGACGGTATCATTGGCAACAATAATGGTGGTGGTGGTGTTGTTGCTGCCACGTTGGAATCTGCCCCCGGAAACTCTGTTTCGGGAGATTCTTCTAACGCTACCGTTGTTGAAAGCTGCAACTCCTCCTCCTTCTCTTTCTCCGGCTGCGACACCGGTATCGTTGCCGATATTGGAAGCCGGAGCCTTGTTGATGGCAATTTCTCCGGCGAACTTTGCGTTCCGTATGATGATTTGGCAGAGTTGGAATGGCTTTCCAATTTTGTGGAAGAATCATTCTCAAGTGAGGACTTACAAAAGATGCAGCTCATATCAGGCATGAAGAGACCCAACGATGATGCTTCGTCCGAGGCCCGCGAGTTCCCCTCAGAGGCCAACAGAAAAAGCCCAATATTCAACTCAGAAGTTTCCGTGCCAGCCAAGGCCCGTAGCAAGCGATCTCGCGTCCCGCCATGCAATTGGGCTTCCCGCCTTCTTGTCCTCTCTCCAATCCCAACTCCAACGACGTCATCATCCTCAGAGCCTGACGTCAGCATGGTCCCTATCCCTACTCCGACCTCCTTCACTGTTCCCGTCACCGGCAAGAAGCCCGCGAAGACGACGGGCCGAAAGAAGGAAAATGGGGACGGCGTGTCTGGTGACGGTCGCAAGTGCTTGCATTGTGCAACGGACAAGACACCTCAGTGGCGGACCGGGCCCATGGGCCCAAAGACATTGTGCAATGCTTGTGGCGTGAGGTACAAGTCAGGCCGGCTTGTCCCGGAGTATAGGCCTGCGGCAAGCCCGACATTCGTGTTAACTAAGCATTCAAACTCGCACCGAAAGGTGTTGGAGTTGCGACGACAAAAGGAGATGATGCGAGCACACCACCACCACCAACAACCGTTCATACAACAACAACAACAACATCATCATCATCATCACCAGAACATGATGTTTGATGTGCCTACGAGTGCTGATGATTACTTGATCCACCACCAACATGTTGGGCCCGATTTCAGGCAGTTGATTTAA 1155 0.5143 METPNIFHNSFCSQFTSDDAGDNNNNTAAAASTGDNFIVEDLLDFSNDDGIIGNNNGGGGVVAATLESAPGNSVSGDSSNATVVESCNSSSFSFSGCDTGIVADIGSRSLVDGNFSGELCVPYDDLAELEWLSNFVEESFSSEDLQKMQLISGMKRPNDDASSEAREFPSEANRKSPIFNSEVSVPAKARSKRSRVPPCNWASRLLVLSPIPTPTTSSSSEPDVSMVPIPTPTSFTVPVTGKKPAKTTGRKKENGDGVSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMRAHHHHQQPFIQQQQQHHHHHHQNMMFDVPTSADDYLIHHQHVGPDFRQLI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151080g00004 384 ProSitePatterns GATA-type zinc finger domain. 265 290 IPR000679 GO:0006355|GO:0043565
Stsc151080g00004 384 Pfam GATA zinc finger 265 298 IPR000679 GO:0006355|GO:0043565
Stsc151080g00004 384 MobiDBLite consensus disorder prediction 246 260 - -
Stsc151080g00004 384 MobiDBLite consensus disorder prediction 213 241 - -
Stsc151080g00004 384 FunFam GATA transcription factor 255 341 - -
Stsc151080g00004 384 CDD ZnF_GATA 264 311 IPR000679 GO:0006355|GO:0043565
Stsc151080g00004 384 PIRSF Txn_fac_GATA_plant 21 357 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc151080g00004 384 ProSiteProfiles GATA-type zinc finger domain profile. 259 295 IPR000679 GO:0006355|GO:0043565
Stsc151080g00004 384 MobiDBLite consensus disorder prediction 155 175 - -
Stsc151080g00004 384 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 261 323 - -
Stsc151080g00004 384 SMART GATA_3 259 309 IPR000679 GO:0006355|GO:0043565
Stsc151080g00004 384 MobiDBLite consensus disorder prediction 213 260 - -
Stsc151080g00004 384 Gene3D - 259 309 IPR013088 GO:0006355|GO:0008270
Stsc151080g00004 384 PANTHER GATA TRANSCRIPTION FACTOR 24 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151080g00004 Stsc-Chr151080 28146 30554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151080g00004 114 384 C2C2-Gata Transcription Factor Family AT5G25830 59.220 1.76e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc151080g00004 GATA 3.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151080g00004 - - zju:107420464 435.261