Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151080g00001 ATGAGTGCTTCCGTTTCTGAGCTTGAAAACACCTCAAACTCATTCCCCCGTTCTTGTTCACCATCATGGCCACCGCCGTCGCTGCCGCCACCACCACCGCTACCGCCACTAACAAATACGAAAAAATCATCGCCTTCAACGAGAATAAAGGGCAAAATAGACTCAAACAACAAGCACCCCGTGTACCGAGGCGTACGGATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGGGAGCCGCGCAAGAAATCGCGCATATGGCTGGGCACATTTCCGACACCGGAGATGGCGGCGAGGGCTCACGATGTCGCCGCGCTAAGTATCAAAGGTAATTCTGCCATACTCAATTTTCCTGACCTCGCAAACTGCCTCCCTCGCCCGGCATCCTTGGCGCCTCGCGACGTCCAGGCTGCCGCAGCAAAGGCAGCTTACATGGACAAGATTGAGTTACTGCCTTCTTCTTCTTTGTCGTCTTCGTCGGAGTTGTCTATGGGATCCGAGGAGGAGCTGACTGAAATTATTGAGCTTCCGAGGCTCGAAACCGGCGATGAGTGCCGGAAGGAGTTTGTGTTTGTGGACTCCGAGGATGCATGGATGCATCAGCCGCCGCCAATGCCGTACGCATGGCTGCAGCACGGAGAAGAAGATGCTGCCTGTTACCGGAGTTTTCTTTCGGATTACTAA 684 0.5439 MSASVSELENTSNSFPRSCSPSWPPPSLPPPPPLPPLTNTKKSSPSTRIKGKIDSNNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPDLANCLPRPASLAPRDVQAAAAKAAYMDKIELLPSSSLSSSSELSMGSEEELTEIIELPRLETGDECRKEFVFVDSEDAWMHQPPPMPYAWLQHGEEDAACYRSFLSDY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151080g00001 227 MobiDBLite consensus disorder prediction 19 39 - -
Stsc151080g00001 227 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Stsc151080g00001 227 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Stsc151080g00001 227 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Stsc151080g00001 227 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Stsc151080g00001 227 MobiDBLite consensus disorder prediction 1 59 - -
Stsc151080g00001 227 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Stsc151080g00001 227 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Stsc151080g00001 227 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Stsc151080g00001 227 MobiDBLite consensus disorder prediction 1 18 - -
Stsc151080g00001 227 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Stsc151080g00001 227 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Stsc151080g00001 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151080g00001 Stsc-Chr151080 9910 10593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151080g00001 37 216 AP2-EREBP Transcription Factor Family AT5G11590 51.759 3.58e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151080g00001 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151080g00001 K09286 - pop:7462924 219.935