LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151079g00021	ATGTTGGAATCACTAGCTCATGGTCAAAGTTTTAAGCTTAAGGGATATGGTTTAATCAAAGATAAGAGTCCCAAATGTTATGCCATTTCATCATTCAGTAGAAGTTCCATTTTCACTGTTTGTTCAGATAAAAAGCAAGTGCCGCTGCTATCACATGGAGTTAGTTATAGGAGTACCTCTCTTTCTGAGAATTTATGTGAAAGAAGACTTTTCAATGTTCCATCATTTTATAGTTGGAAAGGACTCTATCTCTCTAAGAATAAGCCATTACGGTTGGAGCGGTTGCAGACAAGGGCAACTTATGATGTTGCTGGTGCTGTTGAAGTCATCCATGATTTAGGATTGGATACTCTTACTTTCTTGGCTGTGACTGTCTTAATTGTTCCCACATTCAAGTCAATTAAAGCCAGTCCTATACTTGGTTTCTTCTTGGCTGGAGTTGTACTTAGCCAGTTTGGTTTAATCAGAAACCTTACAGATGTTAAAGTTTTGTCCGAATGGGGGATCCTTTTCTTGTTGTTTGAGATGGGTTTAGAGCTTTCTCTTGCACGTCTGAAAGCTCTTGCGAAATATGCCTTCGGTATGGGATTTACTCAGGTTATATTATCTACTTTAGCATTTGCTGCTTTTGAACTCCCCCCAAATGGGGCTGTTGGCACAAAAATTTTGGAATTCCTTTTCCATTCAAGGCCAGATCTGGTGAATATTAGAAGTATTGATGAAGCTGTGGTCATTGCTGCTGCTCTCTCTCTGTCATCTTCTGCATTTGTTCTACAGCTTCTGGCAGAGAAGGGTGAGCTACCTACAAGATTTGGTTCAGCAACTCTGGGAATACTTCTATTTCAGGACATAGCTGTTGTCCCTCTTCTAGTCATTCTTCCAATACTAGAGACCCAGGTTGTCGCAGATGCAAGGAGCTCAGAGGCCTTCGTTGCACTTTGCTTGCTGACCATTGCTGGAACTTCACTTGTCACACAGCATTTGGGCTTTAGTGATACGCTAGGAGCATTTTTAGCTGGCGCACTTTTAGCAGAGACAAATTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTTATTGGATTATTTTTTCTAACTACAGGGACTTCCATTGACATGCAGCTTCTTATGCGAGAGTGGCCACATGTACTTGCACTCTTGGCAGGATTGATTTCTATTAAGACATTGATCATAACAGCAATTGGTCCTCGTGTTGGCCTTACTTTGCAAGAAAGTGTGAGAATAGGATTGCTTCTATCCCAAGGAGGCGAGTTTGGATTTGTTGTTTTCTCCTTAGCAAATAGGCTTGGGGTGCTTCCGCTTGAGCTCAACAAGTTGCTCATAATTGTTGTTGTATTGTCAATGGCATTAACCCCATTTCTTAATGAAGCTGGAAGAAGGGCTGCTGATTTTATTGATGGAAAATTTGATGGGGAGTTTAAAGCTTCAGAGATGGTCAACTTTGGTGTCACTGAACCTGTTGTTATAGTTGGATTTGGACAAATGGGCCAGGTCCTTGCAAATTTCCTTTCCAATCCGTTGGCTTCGGGAGGAGACAGTGATGCTGCAGGATGGCCTTATGTGGCTTTTGATCTTGACCCTACACTAGTTAAGGCTGCTAAAAAAGCTGGCTTTCCAATTCATTACGGGGATGGATCACATCCTGCTGTTCTTCAGTCTGCTGGTATCTCTTCTCCAAAAGCTATTATGGTTATGTTCACCGGCAAGGAAAAGACAGCGGAAGCTGTTCAGAGGCTACGGTTTACTTTCCCTTCAATCCCAATCTATGCCAGAGCTAAGGATCTTGAGCATCTTTTAGATCTGAAGAAAGCAGGTGCAACAGATGCTGTTTTGGAAAATGCAGAGACTAGCTTACAGCTGGGTTCTAAGCTTCTGAAAGGTTTCGGAGTCATGTCGGATGACCTAGCATTTTTGAGTCAGCTCATTAGAGATTCCATGGAGCTACGGGCTCAAGAAACAGCCAGCTACCCTGAATGCGATGAATTAAATATGATGAAACAACTGCAGGTGAGAGTTGGGGACTCAATTTCAGGACATGCACCTATGCCAACAACTTCATCAGAATCAGACCAGCCCCATCAAGGTTCCCTCCCCAGAATTCAGCCAGTTTCAGAACAAGACGATGAACTCAATCAAACTGAAACAAGGCGACGATGA	2190	0.4256	MLESLAHGQSFKLKGYGLIKDKSPKCYAISSFSRSSIFTVCSDKKQVPLLSHGVSYRSTSLSENLCERRLFNVPSFYSWKGLYLSKNKPLRLERLQTRATYDVAGAVEVIHDLGLDTLTFLAVTVLIVPTFKSIKASPILGFFLAGVVLSQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMGFTQVILSTLAFAAFELPPNGAVGTKILEFLFHSRPDLVNIRSIDEAVVIAAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLFQDIAVVPLLVILPILETQVVADARSSEAFVALCLLTIAGTSLVTQHLGFSDTLGAFLAGALLAETNFRTQIEADIRPFRGLLIGLFFLTTGTSIDMQLLMREWPHVLALLAGLISIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAADFIDGKFDGEFKASEMVNFGVTEPVVIVGFGQMGQVLANFLSNPLASGGDSDAAGWPYVAFDLDPTLVKAAKKAGFPIHYGDGSHPAVLQSAGISSPKAIMVMFTGKEKTAEAVQRLRFTFPSIPIYARAKDLEHLLDLKKAGATDAVLENAETSLQLGSKLLKGFGVMSDDLAFLSQLIRDSMELRAQETASYPECDELNMMKQLQVRVGDSISGHAPMPTTSSESDQPHQGSLPRIQPVSEQDDELNQTETRRR	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151079g00021	729	MobiDBLite	consensus disorder prediction	686	729	-	-
	Stsc151079g00021	729	Gene3D	-	301	473	IPR038770	-
	Stsc151079g00021	729	Gene3D	-	112	300	IPR038770	-
	Stsc151079g00021	729	Pfam	Sodium/hydrogen exchanger family	119	296	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Stsc151079g00021	729	Pfam	Sodium/hydrogen exchanger family	305	466	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Stsc151079g00021	729	Pfam	TrkA-N domain	498	621	IPR003148	GO:0006813
	Stsc151079g00021	729	Gene3D	-	495	666	-	-
	Stsc151079g00021	729	MobiDBLite	consensus disorder prediction	690	719	-	-
	Stsc151079g00021	729	FunFam	Glutathione-regulated potassium-efflux system protein KefB	495	667	-	-
	Stsc151079g00021	729	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	496	640	IPR036291	-
	Stsc151079g00021	729	ProSiteProfiles	RCK N-terminal domain profile.	497	629	IPR003148	GO:0006813
	Stsc151079g00021	729	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	299	688	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151079g00021	Stsc-Chr151079	132533	138208	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151079g00021	14	691	Inorganic Solute Cotransporters	AT4G04850	66.262	0.0	924

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151079g00021	K03455		-	gmx:100798214	1010.75