Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151079g00009 ATGGCAGCAGCCGCCGTGCTCCGCACTCTCCGGCGACGTGATGTCGCATCTGCCTCCGTCTCCGCCTTTCGCTCGTTGTCGGGTAGCACTAAACCAGCTTATGTAGCTCACAAGTGGTCAAGTTTGTCTCGACCATTCAGTTCTCGGCCTTCTGGAAATGATGTCATCGGTATTGATTTGGGAACTACAAATTCCTGTGTTGCTGTTATGGAAGGAAAGAATCCTAAAGTTATTGAAAATTCTGAAGGTTCTCGAACAACGCCATCTGTGGTTGCTTTCAACCAGAAAGGGGAGCTGCTTGTTGGTACACCAGCAAAACGTCAGGCAGTAACAAACCCAACAAACACCGTTTTTGGTACCAAGCGGTTGATTGGTCGGCGCTTTGACGATGCCCAAACTCAGAAGGAGATGAAAATGGTTCCTTACAAGATTGTTAAGGCTCCAAATGGAGATGCATGGGTTGAAGCTAATGGCCAGCAATATTCCCCTAGCCAAATTGGTGCCTTTGTTCTCACCAAGATGAAGGAAACTGCAGAAGCTTATCTAGGGAAGTCAATCTCCAAGGCTGTAATTACTGTTCCAGCTTACTTCAATGATGCACAGAGGCAGGCAACCAAAGATGCTGGTAGAATTGCAGGTCTTGATGTGCAGAGAATTATCAATGAGCCAACAGCTGCAGCACTTTCATATGGGATGAACAACAAGGAGGGCCTTATTGCAGTTTTTGATCTTGGAGGTGGAACATTTGATGTCTCCATCTTGGAAATCTCTAATGGTGTCTTTGAGGTGAAAGCAACAAATGGTGACACATTTTTGGGAGGAGAGGACTTTGACAATGCCTTACTGGACTTCCTTGTAAACGAATTCAAGAGAACCGAGAGTATTGATCTTTCAAAAGACAGGCTTGCTTTGCAGAGACTTCTTGCCATGGGAGCTGCAATCCAGGGTGGTATCCTACGTGGAGATGTTAAAGAGCTACTGCTGCTTGATGTTACACCACTTTCACTTGGTATTGAGACTTTGGGTGGTATCTTTACTAGGTTGATCAACCGCAACACTACTATTCCTACCAAAAAGAGTCAGGTCTTTTCAACTGCAGCTGACAATCAGACACAGGTAGGTATTAAGGTGCTACAAGGGGAGCGTGAAATGGCCGCAGACAACAAAATGCTCGGAGAATTTGAGCTTGTTGGCATTCCTCCTGCTCCCAGGGGTTTGCCTCAGATTGAAGTTACCTTTGACATTGATGCCAATGGAATTGTTACTGTCTCTGCCAAAGACAAGGCAACTGGTAAAGAACAACAGATCACAATCCGATCATCTGGTGGACTCTCAGAAGATGAGATTGAGAAGATGGTCAAAGAAGCAGAGTTGCATGCACAGAGAGACCAACAAAGGAAGGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATCTACAGCATCGAGAAGAGTTTGGGTGAATACAGAGACAAGATTCCCAGCGAAGTGGCCAAAGAAATTGAGGATGCTGTTTCAGATTTGAGAACGGCCATGTCTGGCGATGATGCTGATGAAATTAAGGCAAAGCTTGATGCTGCAAACAAGGCTGTCTCCAAGATTGGGCAGCACATGTCAGGTGGTGGCTCAAGTGGCGGTTCCTCAGCCGGAGGGTCTCAAGGTGGAGACCAGGCTCCCGAGGCAGAATATGAGGAGGTGAAGAAGTGA 1710 0.4637 MAAAAVLRTLRRRDVASASVSAFRSLSGSTKPAYVAHKWSSLSRPFSSRPSGNDVIGIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDAQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRLALQRLLAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKMLGEFELVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDQQRKALIDIRNSADTTIYSIEKSLGEYRDKIPSEVAKEIEDAVSDLRTAMSGDDADEIKAKLDAANKAVSKIGQHMSGGGSSGGSSAGGSQGGDQAPEAEYEEVKK 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151079g00009 569 Pfam Hsp70 protein 55 308 IPR013126 GO:0005524|GO:0140662
Stsc151079g00009 569 Gene3D - 118 165 - -
Stsc151079g00009 569 MobiDBLite consensus disorder prediction 534 569 - -
Stsc151079g00009 569 ProSitePatterns Heat shock hsp70 proteins family signature 1. 58 65 IPR018181 -
Stsc151079g00009 569 FunFam Heat shock protein 9 118 169 - -
Stsc151079g00009 569 SUPERFAMILY Actin-like ATPase domain 234 310 IPR043129 -
Stsc151079g00009 569 FunFam Chaperone protein HscA homolog 238 295 - -
Stsc151079g00009 569 FunFam Molecular chaperone DnaK 274 312 - -
Stsc151079g00009 569 Coils Coil 564 569 - -
Stsc151079g00009 569 PRINTS 70kDa heat shock protein signature 105 113 - -
Stsc151079g00009 569 PRINTS 70kDa heat shock protein signature 54 67 - -
Stsc151079g00009 569 PRINTS 70kDa heat shock protein signature 82 94 - -
Stsc151079g00009 569 PRINTS 70kDa heat shock protein signature 247 257 - -
Stsc151079g00009 569 PRINTS 70kDa heat shock protein signature 189 209 - -
Stsc151079g00009 569 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 319 443 IPR029047 -
Stsc151079g00009 569 FunFam Molecular chaperone DnaK 444 543 - -
Stsc151079g00009 569 ProSitePatterns Heat shock hsp70 proteins family signature 2. 241 254 IPR018181 -
Stsc151079g00009 569 Gene3D - 51 238 - -
Stsc151079g00009 569 PANTHER HEAT SHOCK PROTEIN 70KDA 55 307 IPR013126 GO:0005524|GO:0140662
Stsc151079g00009 569 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 471 543 IPR029048 -
Stsc151079g00009 569 FunFam Molecular chaperone DnaK 56 237 - -
Stsc151079g00009 569 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 321 477 IPR029047 -
Stsc151079g00009 569 SUPERFAMILY Actin-like ATPase domain 55 235 IPR043129 -
Stsc151079g00009 569 Gene3D - 239 315 - -
Stsc151079g00009 569 Gene3D - 444 541 IPR029048 -
Stsc151079g00009 569 MobiDBLite consensus disorder prediction 538 555 - -
Stsc151079g00009 569 FunFam Chaperone protein DnaK HSP70 315 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151079g00009 Stsc-Chr151079 69221 72212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151079g00009 56 525 Calmodulin-binding Proteins AT5G02500 39.308 5.73e-93 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151079g00009 K04043 - gmx:100804559 573.163