Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151079g00006 ATGGGGAGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACTAGCCGGCAAGTAACGTTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCCAGGGAATTATCCATTCTCTGTGATGCTGAAGTTGGATTGATCGTGTTCTCAAGCACTAGCAAGCTTTATGAATATTCAAGCACCAGCATGAAAGCGATTATTGAACGCTACAACAAGCTTAAAGAGGAACATAATCAACTGATGAATCCAGCTTCAGAAGTCAAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAATTGATGGGAGAAGAGCTTTCTGGACTGGGTGTTCAAGAATTACAAAATCTTGAAAACCAACTCGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATGTTCACAGATGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATCAAGAAAATGTGGAACTCTGTAAAAAGATGGAATTCCTACAAAAAGAAAATGCAGAGCTAAAAAAGGTTTATGAAGCAAGGAGTACAAATGAAGAGAATGTGGCATCAAATCCTCCATACACTATTAGAAATGGGTATGATTTACTCGCACCTATGAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCAGCCAAAGCAATGAAACTGGGACTACAGCTGCAATAA 708 0.4054 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTSKLYEYSSTSMKAIIERYNKLKEEHNQLMNPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQMFTDEIKELHQKGNLIHQENVELCKKMEFLQKENAELKKVYEARSTNEENVASNPPYTIRNGYDLLAPMSLQLSQPETQYTEPPAKAMKLGLQLQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151079g00006 235 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc151079g00006 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151079g00006 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151079g00006 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151079g00006 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc151079g00006 235 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Stsc151079g00006 235 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Stsc151079g00006 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Stsc151079g00006 235 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151079g00006 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151079g00006 235 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Stsc151079g00006 235 Coils Coil 83 103 - -
Stsc151079g00006 235 Pfam K-box region 85 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151079g00006 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc151079g00006 235 Coils Coil 160 180 - -
Stsc151079g00006 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151079g00006 Stsc-Chr151079 27099 37858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151079g00006 1 234 MADS-box Gene Family AT2G14210 60.924 6.54e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc151079g00006 K-box 4.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151079g00006 K09264 - gmx:100808145 380.948