Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151079g00005 | ATGGGGAGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACTAGCCGGCAAGTAACGTTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCCAGGGAATTATCCATTCTCTGTGATGCTGAAGTTGGATTGATCGTGTTCTCAAGCACTAGCAAGCTTTATGAATATTCAAGCACCAGCATGAAAGCGATTATTGAACGCTACAACAAGCTTAAAGAGGAACATAATCAACTGATGAATCCAGCTTCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAATTGATGGGAGAAGAGCTTTCTGGACTGGGTGTTCAAGAATTACAAAATCTTGAAAACCAACTCGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATGTTCACAGATGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATCAAGAAAATGTGGAACTCTGTAAAAAGATGGAATTCCTACAAAAAGAAAATGCAGAGCTAAAAAAGGTTTATGAAGCAAGGAGTACAAATGAAGAGAATGTGGCATCAAATCCTCCATACACTATTAGAAATGGGTATGATTTACTCGCACCTATGAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCAGCCAAAGCAATGAAACTGGGGTATTTCCTCACACCAATAATAACATACAGTTCTTTTCTATATATTTATTTTATAATTTCATTAAAATTAGAAACCAAATTTCTTCATCAGACTACAGCTGCAATAACAAAAACTGTTCGAGAATCATGGATGATTACCATTTCCGAGCTGCTGTCAACAACTTGTACTACTTATAATGAAGGTTTTATCAGTCAGATCTTGTACTTCAACAATCACATTTGTTTGATGCAACAATACAAATCATATTGGTATGCAATTATCTATCAAGAAGCTTACATTGCCTTTAAAGAACAGACAATGACTACCTATGTAAATTTTATGCAATAA | 1029 | 0.3712 | MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTSKLYEYSSTSMKAIIERYNKLKEEHNQLMNPASEVKFWQREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQMFTDEIKELHQKGNLIHQENVELCKKMEFLQKENAELKKVYEARSTNEENVASNPPYTIRNGYDLLAPMSLQLSQPETQYTEPPAKAMKLGYFLTPIITYSSFLYIYFIISLKLETKFLHQTTAAITKTVRESWMITISELLSTTCTTYNEGFISQILYFNNHICLMQQYKSYWYAIIYQEAYIAFKEQTMTTYVNFMQ | 342 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151079g00005 | 342 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Stsc151079g00005 | 342 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | SUPERFAMILY | SRF-like | 2 | 90 | IPR036879 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Stsc151079g00005 | 342 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 182 | - | - | |
Stsc151079g00005 | 342 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | Coils | Coil | 163 | 183 | - | - | |
Stsc151079g00005 | 342 | Pfam | K-box region | 84 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Stsc151079g00005 | 342 | Coils | Coil | 86 | 106 | - | - | |
Stsc151079g00005 | 342 | Gene3D | - | 13 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Stsc151079g00005 | 342 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151079g00005 | Stsc-Chr151079 | 27099 | 38526 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151079g00005 | 1 | 238 | MADS-box Gene Family | AT2G14210 | 61.925 | 1.01e-90 | 269 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Stsc151079g00005 | K-box | 2.4e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151079g00005 | K09264 | - | gmx:100808145 | 397.512 |