Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151079g00005 ATGGGGAGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACTAGCCGGCAAGTAACGTTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCCAGGGAATTATCCATTCTCTGTGATGCTGAAGTTGGATTGATCGTGTTCTCAAGCACTAGCAAGCTTTATGAATATTCAAGCACCAGCATGAAAGCGATTATTGAACGCTACAACAAGCTTAAAGAGGAACATAATCAACTGATGAATCCAGCTTCAGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGGAAATTGATGGGAGAAGAGCTTTCTGGACTGGGTGTTCAAGAATTACAAAATCTTGAAAACCAACTCGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATGTTCACAGATGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATCAAGAAAATGTGGAACTCTGTAAAAAGATGGAATTCCTACAAAAAGAAAATGCAGAGCTAAAAAAGGTTTATGAAGCAAGGAGTACAAATGAAGAGAATGTGGCATCAAATCCTCCATACACTATTAGAAATGGGTATGATTTACTCGCACCTATGAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCAGCCAAAGCAATGAAACTGGGGTATTTCCTCACACCAATAATAACATACAGTTCTTTTCTATATATTTATTTTATAATTTCATTAAAATTAGAAACCAAATTTCTTCATCAGACTACAGCTGCAATAACAAAAACTGTTCGAGAATCATGGATGATTACCATTTCCGAGCTGCTGTCAACAACTTGTACTACTTATAATGAAGGTTTTATCAGTCAGATCTTGTACTTCAACAATCACATTTGTTTGATGCAACAATACAAATCATATTGGTATGCAATTATCTATCAAGAAGCTTACATTGCCTTTAAAGAACAGACAATGACTACCTATGTAAATTTTATGCAATAA 1029 0.3712 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTSKLYEYSSTSMKAIIERYNKLKEEHNQLMNPASEVKFWQREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQMFTDEIKELHQKGNLIHQENVELCKKMEFLQKENAELKKVYEARSTNEENVASNPPYTIRNGYDLLAPMSLQLSQPETQYTEPPAKAMKLGYFLTPIITYSSFLYIYFIISLKLETKFLHQTTAAITKTVRESWMITISELLSTTCTTYNEGFISQILYFNNHICLMQQYKSYWYAIIYQEAYIAFKEQTMTTYVNFMQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151079g00005 342 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc151079g00005 342 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Stsc151079g00005 342 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151079g00005 342 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Stsc151079g00005 342 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 Coils Coil 163 183 - -
Stsc151079g00005 342 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151079g00005 342 Coils Coil 86 106 - -
Stsc151079g00005 342 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Stsc151079g00005 342 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc151079g00005 342 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151079g00005 Stsc-Chr151079 27099 38526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151079g00005 1 238 MADS-box Gene Family AT2G14210 61.925 1.01e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc151079g00005 K-box 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151079g00005 K09264 - gmx:100808145 397.512