Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151079g00004 ATGAGTTCAGAAGAATGCCTTGCTTGGGCTGCAAGAGATGCTTCAGGACATCTCTCACCATACAAATTCAACCGCAGAGCTGTAGGAGATGATGATGTTTATGTTAAGATCACACATTGTGGTGTTTGTTATGCTGATATCGTTTGGACAAGGAATAAACATGGTGACTCCATGTACCCTGTTGTGCCAGGACATGAGATTGCAGGCATTGTCACAAAGGTTGGTTCCAATGTCAAGCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGCCGCGACTGCGAGTATTGCGACGATGGACTAGAACAACAGTGCAGTAAGGGAGCAGTTTTTACTTTCAATGGGGTTGATTCTGATGGCACAATCACAAAGGGAGGATACTCCAATTTCATAGTTGTCCATGAAAGGTATTGTTTCAAGATACCAAAGACCTATCCATTGGCTTCAGCAGCACCTTTGCTCTGTGCCGGAATCACTGTTTATTCGCCGATGATTCGCCACAAGATGAATCAGCAGCCCGGAAAATCTCTAGGAGTGATTGGCCTTGGTGGGCTTGGTCACATGGCTGTTAAATTTGGGAAGGCTTTTGGTTTGAATGTAACGGTTTTCAGCACCAGCATTTCTAAGAAAGATGAGGCCCTCAATCTGCTTGGTGCAGATAACTTTGTGATTTCATCTGATCAAGAGCAAATGAAAGGATTAACAAAGACATTAGACTTTATAATTGATACTGCATCTGGTGATCATCCTTTTGAACCTTACTTGGCACTTCTGAAAACATTTGGTATACTAGTGGCAGTTGGGGCTGGAAGTGAAATCAAGTTTAGCCCTAGAAGCTTATTTTTCAGATTGAGGACTATTTCTGGAAGTATTGTAGGAGGCACAAAAGAGATACAAGAGATGATTGATTTATGTGCTGAAAAGGCGATTTATCCAAAGATAGAAGTAATTCCAATTGACTATGCTAATGAAGCTATTGAAAGGGTCATCAAAAGTGACGTCAAGTATCGGTTTGTGATTGATATTGAGAAGTCCCTAAAGTGA 1059 0.4174 MSSEECLAWAARDASGHLSPYKFNRRAVGDDDVYVKITHCGVCYADIVWTRNKHGDSMYPVVPGHEIAGIVTKVGSNVKRFNVGDHVGVGTYVNSCRDCEYCDDGLEQQCSKGAVFTFNGVDSDGTITKGGYSNFIVVHERYCFKIPKTYPLASAAPLLCAGITVYSPMIRHKMNQQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNLLGADNFVISSDQEQMKGLTKTLDFIIDTASGDHPFEPYLALLKTFGILVAVGAGSEIKFSPRSLFFRLRTISGSIVGGTKEIQEMIDLCAEKAIYPKIEVIPIDYANEAIERVIKSDVKYRFVIDIEKSLK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151079g00004 352 Pfam Zinc-binding dehydrogenase 189 311 IPR013149 -
Stsc151079g00004 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 151 315 IPR036291 -
Stsc151079g00004 352 FunFam probable cinnamyl alcohol dehydrogenase 9 177 - -
Stsc151079g00004 352 FunFam Cinnamyl alcohol dehydrogenase 161 317 - -
Stsc151079g00004 352 FunFam Putative cinnamyl alcohol dehydrogenase 6 318 347 - -
Stsc151079g00004 352 SUPERFAMILY GroES-like 10 173 IPR011032 -
Stsc151079g00004 352 SMART PKS_ER_names_mod 16 345 IPR020843 GO:0016491
Stsc151079g00004 352 CDD CAD1 8 346 IPR047109 GO:0016616
Stsc151079g00004 352 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 182 209 IPR029752 -
Stsc151079g00004 352 Gene3D - 9 347 - -
Stsc151079g00004 352 Pfam Alcohol dehydrogenase GroES-like domain 31 146 IPR013154 -
Stsc151079g00004 352 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 64 78 IPR002328 GO:0008270|GO:0016491
Stsc151079g00004 352 Gene3D - 161 317 - -
Stsc151079g00004 352 PANTHER ALDEHYDE REDUCTASE 5 350 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151079g00004 Stsc-Chr151079 17728 19283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151079g00004 5 352 Monolignol Biosynthesis Gene Families AT1G72680 72.414 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151079g00004 K00083 - cave:132174908 572.778