Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151079g00003 ATGAGTTGTTCGGAAGATTGCCTTGGTTGGGCTGCAAGAGATGCTTCTGGACATCTCTCACCATACAAATTCAGTCGCAGGGCTGTTGGAGATGATGATGTTTATGTTAAGATCACACACTGTGGTGTTTGTTATGCTGATATCGTTTGGACAAGGAACAAATTTGGTGACTCCAAGTACCCTGTTGTGCCAGGACATGAGATTGCAGGCATTGTCACAAAGGTTGGTTCCAATGTCAAGCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGGCTTATGTCAACTCATGCCGCGACTGCGAGTATTGCGACGATGGACTAGAACATCAGTGCAGTAAGGGAGCAGTTTTTACTTTCAATGGTGTTGATTCTGATGGTACAATCACAAAGGGAGGATACTCAAATTTCATAGTAGTCCATGAAAGGTATTGTTTCCAGATACCAAAAAGCTATCCATTGGCTTCAGCAGCACCTTTGCTGTGTGCCGGAATCACTGTTTATTCACCGATGATTCGCCACAAGATGAATCAGCAGCCCGGAAAATCTCTAGGAGTGATTGGTCTTGGTGGACTTGGTCACATGGCTGTTAAATTTGGAAAGGCTTTTGGTTTGAATGTAACAGTTTTCAGCACTAGCATTTCTAAGAAAGATGAGGCCCTCAATCTGCTTGGTGCAGATAACTTTGTGATTTCATCTGATCAAGAGCAAATGAAAGGATTAACAAAGACATTAGACTTTATAATTGACACTGCATCTGGTGATCATCATTTTGATCCTTACTTGGCACTTCTGAAAACATTTGGAATCCTAGTTGTAGTTGGGTCTGCAAGTGAAATCAAGTTCAGACCTGCAAGCCTATTTATTGGATCGAAGAGTATTTCTGGAAGTGGTGTTGGAGGTACAAAAGATATACAAGAGATGATCAATTTATGTGCTGAAAAGGAGATTTATCCAAAGATAGAAGTAATTCCAATTGACTATGCTAATGAAGCTATTGAAAGGGTCATCAAAAGTGACGTCAAGTATCGGTTTGTGATTGATATTGAGAACTCCCTAAAGTGA 1062 0.4115 MSCSEDCLGWAARDASGHLSPYKFSRRAVGDDDVYVKITHCGVCYADIVWTRNKFGDSKYPVVPGHEIAGIVTKVGSNVKRFNVGDHVGVGAYVNSCRDCEYCDDGLEHQCSKGAVFTFNGVDSDGTITKGGYSNFIVVHERYCFQIPKSYPLASAAPLLCAGITVYSPMIRHKMNQQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTVFSTSISKKDEALNLLGADNFVISSDQEQMKGLTKTLDFIIDTASGDHHFDPYLALLKTFGILVVVGSASEIKFRPASLFIGSKSISGSGVGGTKDIQEMINLCAEKEIYPKIEVIPIDYANEAIERVIKSDVKYRFVIDIENSLK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151079g00003 353 PANTHER ALDEHYDE REDUCTASE 6 351 IPR047109 GO:0016616
Stsc151079g00003 353 Pfam Zinc-binding dehydrogenase 190 312 IPR013149 -
Stsc151079g00003 353 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 183 210 IPR029752 -
Stsc151079g00003 353 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 152 316 IPR036291 -
Stsc151079g00003 353 SUPERFAMILY GroES-like 13 174 IPR011032 -
Stsc151079g00003 353 FunFam Putative cinnamyl alcohol dehydrogenase 6 319 348 - -
Stsc151079g00003 353 Pfam Alcohol dehydrogenase GroES-like domain 32 146 IPR013154 -
Stsc151079g00003 353 Gene3D - 10 348 - -
Stsc151079g00003 353 Gene3D - 162 318 - -
Stsc151079g00003 353 CDD CAD1 9 347 IPR047109 GO:0016616
Stsc151079g00003 353 SMART PKS_ER_names_mod 17 346 IPR020843 GO:0016491
Stsc151079g00003 353 FunFam probable cinnamyl alcohol dehydrogenase 10 178 - -
Stsc151079g00003 353 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270|GO:0016491
Stsc151079g00003 353 FunFam Cinnamyl alcohol dehydrogenase 162 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151079g00003 Stsc-Chr151079 14320 16057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151079g00003 1 353 Monolignol Biosynthesis Gene Families AT1G72680 71.148 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151079g00003 K00083 - gmx:100806165 579.326