LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151078g00019	ATGACCCCTCTTGTTTCCAACCAACAATTTGCAGCTCTTCACAAAGGCTCTCAAAATGCCACTGTCTATGCTTTTTCTCAGTGTATCAAAGATCTCTCTAAACCTGATTGTGATGTTTGCTTCTCCCAATCCAAGACAAACATCTTAAAATGCTCGCTGTTTCAGAGAGGCACTATTGGTGGAAGACTATTCCTTGATGGGTGCTACATAAGGTATGATCACAGCAATTTCTTCAATGAGAGTAGTGTTAGTGGTGAAGATAAAACTGTGTGTGGAACCAAGGATTTTGGTGGGGATAGGAGTGTTTACAAGGCTAATGCTATGGAATTGGTGAGGAAGTTGAGCTTGGAAGCACAAAAGAAAAATAACAGTGATATGTTCTTCTTCTCTGTTGGGTCTGTGAATCATGGGAATGTGAGTGTTTATGGTTTGGCTCAGTGCTGGAAATTTGTGAATGAAAGTGGATGCAAGACATGTTTGGATGAAGCTGTTAATAGGATTCAGTCATGTGCTTCAAAAGAAGGGAGGGTTCTGAGTGTTGGTTGTTACTTGAGGTATTCAAATAACAAATTCTATAATGATAATTCAAGCAGTGTTGTTGCCCCTTTCAGAAACCGAGGACATATTAACCTTCCCATAATTGTGGCTGCATCATCATCTACCTTGGCTCTGCTGCTGATCATTGTAACGGTTTCTTTCTTTGTAAGAATGAATATCTTGAAGCAGAGAAGAGAAAGAAGACAGTTTGGTGCCCTTTTGGAAACAGTGAATCAGTCTAAACTGAATATGTCATATGAAGTTCTTGAACAAGCAACAAATTACTTCAATGATTCCAATAAGCTAGGAGAAGGAGGAACAGGTCCAGTTTACAAAGGAGTTCTACCAGATGGAAAGACTGTAGCCATAAAAAGGCTTAGCTTTATCACAACACAATGGGCAGATCATTTTTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAAAATCTTGTGAAGCTTTTAGGGTGCAGCATCACAGGACCTGAAAGCCTTCTTGTCTATGAATATGTACCTAATGGGAGCCTCTCTGATCATCTTTGTGTTAGAAAGAAATCTGAAGGGTTGAATTGGGAAGTGAGGCATAAGATCATGTTGGGAACTGCAGAGGGGTTGTCCTATCTCCATGAGGAATCACAAATGAGAATAATTCATAGAGATATAAAATTGGGCAATGTTCTACTTGATGAAAACTTCACACCCAAGATTGCTGATTTTGGACTTGTTAGATTGTTCCCAGAAGAAAATTCTCACCTTAGCACAACCATTGCTGGCACACTGGGTTACATGGCTCCTAAATATGTAATTCTAGGAAAATTAACCGAGAAAGCAGATGTCTACAGTTTCGGAGTTTTAGTCATTGAAATTGTATCCGACAAAAAGATTAGGTCAATTCTTCAAAATTCAATCTCCATTCTGCACGTGGTTTGGAACCTGTATGAAACAAAGAAGCTATGTGAAATTGTTGATCCAAGCCTAGAAGGAAATTACCCTGCAGAGGAAGCATGCAAATTCCTTAAGATAGGATTGCTTTGTGCACAAGCATCTCCAGAGCTGAGACCATCAATGTCAAAAGTTGTGAAAATGATTAAGGGCAACAATCATGAACAGATTGCTGAGCCAACACAGCCACCATTTCTAAACCATTGCAGCGCAGAATTCAGCAGATCTATTTTAGATACTGAACCTTTGTACATTTCAAATCAGAGTTCAAAGTATTTTAGTGCAGCATGA	1773	0.3914	MTPLVSNQQFAALHKGSQNATVYAFSQCIKDLSKPDCDVCFSQSKTNILKCSLFQRGTIGGRLFLDGCYIRYDHSNFFNESSVSGEDKTVCGTKDFGGDRSVYKANAMELVRKLSLEAQKKNNSDMFFFSVGSVNHGNVSVYGLAQCWKFVNESGCKTCLDEAVNRIQSCASKEGRVLSVGCYLRYSNNKFYNDNSSSVVAPFRNRGHINLPIIVAASSSTLALLLIIVTVSFFVRMNILKQRRERRQFGALLETVNQSKLNMSYEVLEQATNYFNDSNKLGEGGTGPVYKGVLPDGKTVAIKRLSFITTQWADHFFNEVNLISGIQHKNLVKLLGCSITGPESLLVYEYVPNGSLSDHLCVRKKSEGLNWEVRHKIMLGTAEGLSYLHEESQMRIIHRDIKLGNVLLDENFTPKIADFGLVRLFPEENSHLSTTIAGTLGYMAPKYVILGKLTEKADVYSFGVLVIEIVSDKKIRSILQNSISILHVVWNLYETKKLCEIVDPSLEGNYPAEEACKFLKIGLLCAQASPELRPSMSKVVKMIKGNNHEQIAEPTQPPFLNHCSAEFSRSILDTEPLYISNQSSKYFSAA	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151078g00019	590	Pfam	Salt stress response/antifungal	96	188	IPR002902	-
	Stsc151078g00019	590	Pfam	Salt stress response/antifungal	10	74	IPR002902	-
	Stsc151078g00019	590	FunFam	Cysteine-rich receptor-like protein kinase 2	241	350	-	-
	Stsc151078g00019	590	Gene3D	-	3	77	IPR038408	-
	Stsc151078g00019	590	Gene3D	-	87	191	IPR038408	-
	Stsc151078g00019	590	SUPERFAMILY	Protein kinase-like (PK-like)	262	569	IPR011009	-
	Stsc151078g00019	590	Gene3D	Transferase(Phosphotransferase) domain 1	351	557	-	-
	Stsc151078g00019	590	SMART	serkin_6	275	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00019	590	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	396	408	IPR008271	GO:0004672\|GO:0006468
	Stsc151078g00019	590	Gene3D	Phosphorylase Kinase; domain 1	235	350	-	-
	Stsc151078g00019	590	FunFam	Cysteine-rich receptor-like protein kinase 3	87	191	-	-
	Stsc151078g00019	590	CDD	STKc_IRAK	281	545	-	-
	Stsc151078g00019	590	ProSiteProfiles	Gnk2-homologous domain profile.	84	191	IPR002902	-
	Stsc151078g00019	590	Pfam	Protein kinase domain	276	541	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00019	590	ProSiteProfiles	Gnk2-homologous domain profile.	1	77	IPR002902	-
	Stsc151078g00019	590	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	23	570	-	-
	Stsc151078g00019	590	ProSiteProfiles	Protein kinase domain profile.	275	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00019	590	FunFam	Cysteine-rich receptor-like protein kinase 2	351	551	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151078g00019	Stsc-Chr151078	169916	177342	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151078g00019	1	440	Receptor kinase-like Gene Family	AT1G70530	55.882	6.85e-177	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc151078g00019		Pkinase	7.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151078g00019	-		-	aip:107643328	1047.73