LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151078g00018	ATGAGAGCGATTTTCCCTCGCGTCTTCTCTGTTCTTCGCGCCACCACCCCTACCGTCTTCTCCGATTCACAAACAACAGAGGCAGCACTATTGTGCTCCAACAAAATTGCAGCCCCACCTGTTCGACGAAATTTCATATCAAACTTCTGGGATGCCTTGAGCTCCATGACCCCTCTTGTTTCCAACCAACAATTTGCAGCTCTTCACAAAGGCTCTCAAAATGCCACTGTCTATGCTTTTTCTCAGTGTATCAAAGATCTCTCTAAACCTGATTGTGATGTTTGCTTCTCCCAATCCAAGACAAACATCTTAAAATGCTCGCTGTTTCAGAGAGGCACTATTGGTGGAAGACTATTCCTTGATGGGTGCTACATAAGGTATGATCACAGCAATTTCTTCAATGAGAGTAGTGTTAGTGGTGAAGATAAAACTGTGTGTGGAACCAAGGATTTTGGTGGGGATAGGAGTGTTTACAAGGCTAATGCTATGGAATTGGTGAGGAAGTTGAGCTTGGAAGCACAAAAGAAAAATAACAGTGATATGTTCTTCTTCTCTGTTGGGTCTGTGAATCATGGGAATGTGAGTGTTTATGGTTTGGCTCAGTGCTGGAAATTTGTGAATGAAAGTGGATGCAAGACATGTTTGGATGAAGCTGTTAATAGGATTCAGTCATGTGCTTCAAAAGAAGGGAGGGTTCTGAGTGTTGGTTGTTACTTGAGGTATTCAAATAACAAATTCTATAATGATAATTCAAGCAGTGTTGTTGCCCCTTTCAGAAACCGAGGACATATTAACCTTCCCATAATTGTGGCTGCATCATCATCTACCTTGGCTCTGCTGCTGATCATTGTAACGGTTTCTTTCTTTGTAAGAATGAATATCTTGAAGCAGAGAAGAGAAAGAAGACAGTTTGGTGCCCTTTTGGAAACAGTGAATCAGTCTAAACTGAATATGTCATATGAAGTTCTTGAACAAGCAACAAATTACTTCAATGATTCCAATAAGCTAGGAGAAGGAGGAACAGGTCCAGTTTACAAAGGAGTTCTACCAGATGGAAAGACTGTAGCCATAAAAAGGCTTAGCTTTATCACAACACAATGGGCAGATCATTTTTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAAAATCTTGTGAAGCTTTTAGGGTGCAGCATCACAGGACCTGAAAGCCTTCTTGTCTATGAATATGTACCTAATGGGAGCCTCTCTGATCATCTTTGTGTTAGAAAGAAATCTGAAGGGTTGAATTGGGAAGTGAGGCATAAGATCATGTTGGGAACTGCAGAGGGGTTGTCCTATCTCCATGAGGAATCACAAATGAGAATAATTCATAGAGATATAAAATTGGGCAATGTTCTACTTGATGAAAACTTCACACCCAAGATTGCTGATTTTGGACTTGTTAGATTGTTCCCAGAAGAAAATTCTCACCTTAGCACAACCATTGCTGGCACACTGGGTTACATGGCTCCTAAATATGTAATTCTAGGAAAATTAACCGAGAAAGCAGATGTCTACAGTTTCGGAGTTTTAGTCATTGAAATTGTATCCGACAAAAAGATTAGGTCAATTCTTCAAAATTCAATCTCCATTCTGCACGTGGTTTGGAACCTGTATGAAACAAAGAAGCTATGTGAAATTGTTGATCCAAGCCTAGAAGGAAATTACCCTGCAGAGGAAGCATGCAAATTCCTTAAGATAGGATTGCTTTGTGCACAAGCATCTCCAGAGCTGAGACCATCAATGTCAAAAGTTGTGAAAATGATTAAGGGCAACAATCATGAACAGATTGCTGAGCCAACACAGCCACCATTTCTAAACCATTGCAGCGCAGAATTCAGCAGATCTATTTTAGATACTGAACCTTTGTACATTTCAAATCAGAGTTCAAAGTATTTTAGTGCAGCATGA	1938	0.4009	MRAIFPRVFSVLRATTPTVFSDSQTTEAALLCSNKIAAPPVRRNFISNFWDALSSMTPLVSNQQFAALHKGSQNATVYAFSQCIKDLSKPDCDVCFSQSKTNILKCSLFQRGTIGGRLFLDGCYIRYDHSNFFNESSVSGEDKTVCGTKDFGGDRSVYKANAMELVRKLSLEAQKKNNSDMFFFSVGSVNHGNVSVYGLAQCWKFVNESGCKTCLDEAVNRIQSCASKEGRVLSVGCYLRYSNNKFYNDNSSSVVAPFRNRGHINLPIIVAASSSTLALLLIIVTVSFFVRMNILKQRRERRQFGALLETVNQSKLNMSYEVLEQATNYFNDSNKLGEGGTGPVYKGVLPDGKTVAIKRLSFITTQWADHFFNEVNLISGIQHKNLVKLLGCSITGPESLLVYEYVPNGSLSDHLCVRKKSEGLNWEVRHKIMLGTAEGLSYLHEESQMRIIHRDIKLGNVLLDENFTPKIADFGLVRLFPEENSHLSTTIAGTLGYMAPKYVILGKLTEKADVYSFGVLVIEIVSDKKIRSILQNSISILHVVWNLYETKKLCEIVDPSLEGNYPAEEACKFLKIGLLCAQASPELRPSMSKVVKMIKGNNHEQIAEPTQPPFLNHCSAEFSRSILDTEPLYISNQSSKYFSAA	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151078g00018	645	ProSiteProfiles	Gnk2-homologous domain profile.	139	246	IPR002902	-
	Stsc151078g00018	645	SUPERFAMILY	Protein kinase-like (PK-like)	317	624	IPR011009	-
	Stsc151078g00018	645	SMART	serkin_6	330	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00018	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	451	463	IPR008271	GO:0004672\|GO:0006468
	Stsc151078g00018	645	Gene3D	-	142	246	IPR038408	-
	Stsc151078g00018	645	Gene3D	-	14	132	IPR038408	-
	Stsc151078g00018	645	FunFam	Cysteine-rich receptor-like protein kinase 2	296	405	-	-
	Stsc151078g00018	645	ProSiteProfiles	Gnk2-homologous domain profile.	26	132	IPR002902	-
	Stsc151078g00018	645	Pfam	Salt stress response/antifungal	43	129	IPR002902	-
	Stsc151078g00018	645	Pfam	Salt stress response/antifungal	151	243	IPR002902	-
	Stsc151078g00018	645	Pfam	Protein kinase domain	331	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00018	645	CDD	STKc_IRAK	336	600	-	-
	Stsc151078g00018	645	FunFam	Cysteine-rich receptor-like protein kinase 2	406	606	-	-
	Stsc151078g00018	645	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	78	625	-	-
	Stsc151078g00018	645	Gene3D	Phosphorylase Kinase; domain 1	290	405	-	-
	Stsc151078g00018	645	ProSiteProfiles	Protein kinase domain profile.	330	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00018	645	Gene3D	Transferase(Phosphotransferase) domain 1	406	612	-	-
	Stsc151078g00018	645	FunFam	Cysteine-rich receptor-like protein kinase 3	142	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151078g00018	Stsc-Chr151078	169916	177342	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151078g00018	16	495	Receptor kinase-like Gene Family	AT1G70530	54.149	0.0	535

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc151078g00018		Pkinase	8.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151078g00018	-		-	aip:107643328	1106.28