Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151078g00017 ATGCCTTCTTCTTCATCACCATCGTTTCTTGTTGTCTTGCTTTCTTGTTACCATGCACTTACTATTATTGTTATTATCCCTTGTGCACTTGCTGACCCAAGAACAACAGAGGCAGCACTATTGTGCTCCAACAAAATTGCAGCCCCACCTGTTCGACGAAATTTCATATCAAACTTCTGGGATGCCTTGAGCTCCATGACCCCTCTTGTTTCCAACCAACAATTTGCAGCTCTTCACAAAGGCTCTCAAAATGCCACTGTCTATGCTTTTTCTCAGTGTATCAAAGATCTCTCTAAACCTGATTGTGATGTTTGCTTCTCCCAATCCAAGACAAACATCTTAAAATGCTCGCTGTTTCAGAGAGGCACTATTGGTGGAAGACTATTCCTTGATGGGTGCTACATAAGGTATGATCACAGCAATTTCTTCAATGAGAGTAGTGTTAGTGGTGAAGATAAAACTGTGTGTGGAACCAAGGATTTTGGTGGGGATAGGAGTGTTTACAAGGCTAATGCTATGGAATTGGTGAGGAAGTTGAGCTTGGAAGCACAAAAGAAAAATAACAGTGATATGTTCTTCTTCTCTGTTGGGTCTGTGAATCATGGGAATGTGAGTGTTTATGGTTTGGCTCAGTGCTGGAAATTTGTGAATGAAAGTGGATGCAAGACATGTTTGGATGAAGCTGTTAATAGGATTCAGTCATGTGCTTCAAAAGAAGGGAGGGTTCTGAGTGTTGGTTGTTACTTGAGGTATTCAAATAACAAATTCTATAATGATAATTCAAGCAGTGTTGTTGCCCCTTTCAGAAACCGAGGACATATTAACCTTCCCATAATTGTGGCTGCATCATCATCTACCTTGGCTCTGCTGCTGATCATTGTAACGGTTTCTTTCTTTGTAAGAATGAATATCTTGAAGCAGAGAAGAGAAAGAAGACAGTTTGGTGCCCTTTTGGAAACAGTGAATCAGTCTAAACTGAATATGTCATATGAAGTTCTTGAACAAGCAACAAATTACTTCAATGATTCCAATAAGCTAGGAGAAGGAGGAACAGGTCCAGTTTACAAAGGAGTTCTACCAGATGGAAAGACTGTAGCCATAAAAAGGCTTAGCTTTATCACAACACAATGGGCAGATCATTTTTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAAAATCTTGTGAAGCTTTTAGGGTGCAGCATCACAGGACCTGAAAGCCTTCTTGTCTATGAATATGTACCTAATGGGAGCCTCTCTGATCATCTTTGTGGTTTGTGTTTTACATCCAATCTTAAAAGATATTATTTGTTGAAATCGACAATTATTTTGAAACGAACAGAGTATTAA 1356 0.3923 MPSSSSPSFLVVLLSCYHALTIIVIIPCALADPRTTEAALLCSNKIAAPPVRRNFISNFWDALSSMTPLVSNQQFAALHKGSQNATVYAFSQCIKDLSKPDCDVCFSQSKTNILKCSLFQRGTIGGRLFLDGCYIRYDHSNFFNESSVSGEDKTVCGTKDFGGDRSVYKANAMELVRKLSLEAQKKNNSDMFFFSVGSVNHGNVSVYGLAQCWKFVNESGCKTCLDEAVNRIQSCASKEGRVLSVGCYLRYSNNKFYNDNSSSVVAPFRNRGHINLPIIVAASSSTLALLLIIVTVSFFVRMNILKQRRERRQFGALLETVNQSKLNMSYEVLEQATNYFNDSNKLGEGGTGPVYKGVLPDGKTVAIKRLSFITTQWADHFFNEVNLISGIQHKNLVKLLGCSITGPESLLVYEYVPNGSLSDHLCGLCFTSNLKRYYLLKSTIILKRTEY 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151078g00017 451 ProSiteProfiles Gnk2-homologous domain profile. 36 142 IPR002902 -
Stsc151078g00017 451 Gene3D Phosphorylase Kinase; domain 1 300 415 - -
Stsc151078g00017 451 FunFam Cysteine-rich receptor-like protein kinase 2 306 415 - -
Stsc151078g00017 451 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 88 427 - -
Stsc151078g00017 451 Gene3D - 38 142 IPR038408 -
Stsc151078g00017 451 Gene3D - 152 256 IPR038408 -
Stsc151078g00017 451 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Stsc151078g00017 451 SUPERFAMILY Protein kinase-like (PK-like) 317 430 IPR011009 -
Stsc151078g00017 451 Pfam Salt stress response/antifungal 53 139 IPR002902 -
Stsc151078g00017 451 Pfam Salt stress response/antifungal 161 253 IPR002902 -
Stsc151078g00017 451 FunFam Cysteine-rich receptor-like protein kinase 3 152 256 - -
Stsc151078g00017 451 ProSiteProfiles Protein kinase domain profile. 340 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00017 451 Pfam Protein tyrosine and serine/threonine kinase 343 425 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151078g00017 Stsc-Chr151078 169831 172881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151078g00017 29 425 Receptor kinase-like Gene Family AT1G70530 50.877 4.23e-141 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151078g00017 PK_Tyr_Ser-Thr 2.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151078g00017 - - aip:107643328 738.028