LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151078g00016	ATGCCTTCTTCTTCATCACCATCGTTTCTTGTTGTCTTGCTTTCTTGTTACCATGCACTTACTATTATTGTTATTATCCCTTGTGCACTTGCTGACCCAAGAACAACAGAGGCAGCACTATTGTGCTCCAACAAAATTGCAGCCCCACCTGTTCGACGAAATTTCATATCAAACTTCTGGGATGCCTTGAGCTCCATGACCCCTCTTGTTTCCAACCAACAATTTGCAGCTCTTCACAAAGGCTCTCAAAATGCCACTGTCTATGCTTTTTCTCAGTGTATCAAAGATCTCTCTAAACCTGATTGTGATGTTTGCTTCTCCCAATCCAAGACAAACATCTTAAAATGCTCGCTGTTTCAGAGAGGCACTATTGGTGGAAGACTATTCCTTGATGGGTGCTACATAAGGTATGATCACAGCAATTTCTTCAATGAGAGTAGTGTTAGTGGTGAAGATAAAACTGTGTGTGGAACCAAGGATTTTGGTGGGGATAGGAGTGTTTACAAGGCTAATGCTATGGAATTGGTGAGGAAGTTGAGCTTGGAAGCACAAAAGAAAAATAACAGTGATATGTTCTTCTTCTCTGTTGGGTCTGTGAATCATGGGAATGTGAGTGTTTATGGTTTGGCTCAGTGCTGGAAATTTGTGAATGAAAGTGGATGCAAGACATGTTTGGATGAAGCTGTTAATAGGATTCAGTCATGTGCTTCAAAAGAAGGGAGGGTTCTGAGTGTTGGTTGTTACTTGAGGTATTCAAATAACAAATTCTATAATGATAATTCAAGCAGTGTTGTTGCCCCTTTCAGAAACCGAGGACATATTAACCTTCCCATAATTGTGGCTGCATCATCATCTACCTTGGCTCTGCTGCTGATCATTGTAACGGTTTCTTTCTTTGTAAGAATGAATATCTTGAAGCAGAGAAGAGAAAGAAGACAGTTTGGTGCCCTTTTGGAAACAGTGAATCAGTCTAAACTGAATATGTCATATGAAGTTCTTGAACAAGCAACAAATTACTTCAATGATTCCAATAAGCTAGGAGAAGGAGGAACAGGTCCAGTTTACAAAGGAGTTCTACCAGATGGAAAGACTGTAGCCATAAAAAGGCTTAGCTTTATCACAACACAATGGGCAGATCATTTTTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAAAATCTTGTGAAGCTTTTAGGGTGCAGCATCACAGGACCTGAAAGCCTTCTTGTCTATGAATATGTACCTAATGGGAGCCTCTCTGATCATCTTTGTGTTAGAAAGAAATCTGAAGGGTTGAATTGGGAAGTGAGGCATAAGATCATGTTGGGAACTGCAGAGGGGTTGTCCTATCTCCATGAGGAATCACAAATGAGAATAATTCATAGAGATATAAAATTGGGCAATGTTCTACTTGATGAAAACTTCACACCCAAGATTGCTGATTTTGGACTTGTTAGATTGTTCCCAGAAGAAAATTCTCACCTTAGCACAACCATTGCTGGCACACTGGGTTACATGGCTCCTAAATATGTAATTCTAGGAAAATTAACCGAGAAAGCAGATGTCTACAGTTTCGGAGTTTTAGTCATTGAAATTGTATCCGACAAAAAGATTAGGTCAATTCTTCAAAATTCAATCTCCATTCTGCACGTGGTTTGGAACCTGTATGAAACAAAGAAGCTATGTGAAATTGTTGATCCAAGCCTAGAAGGAAATTACCCTGCAGAGGAAGCATGCAAATTCCTTAAGATAGGATTGCTTTGTGCACAAGCATCTCCAGAGCTGAGACCATCAATGTCAAAAGTTGTGAAAATGATTAAGGGCAACAATCATGAACAGATTGCTGAGCCAACACAGCCACCATTTCTAAACCATTGCAGCGCAGAATTCAGCAGATCTATTTTAGATACTGAACCTTTGTACATTTCAAATCAGAGTTCAAAGTATTTTAGTGCAGCATGA	1968	0.3953	MPSSSSPSFLVVLLSCYHALTIIVIIPCALADPRTTEAALLCSNKIAAPPVRRNFISNFWDALSSMTPLVSNQQFAALHKGSQNATVYAFSQCIKDLSKPDCDVCFSQSKTNILKCSLFQRGTIGGRLFLDGCYIRYDHSNFFNESSVSGEDKTVCGTKDFGGDRSVYKANAMELVRKLSLEAQKKNNSDMFFFSVGSVNHGNVSVYGLAQCWKFVNESGCKTCLDEAVNRIQSCASKEGRVLSVGCYLRYSNNKFYNDNSSSVVAPFRNRGHINLPIIVAASSSTLALLLIIVTVSFFVRMNILKQRRERRQFGALLETVNQSKLNMSYEVLEQATNYFNDSNKLGEGGTGPVYKGVLPDGKTVAIKRLSFITTQWADHFFNEVNLISGIQHKNLVKLLGCSITGPESLLVYEYVPNGSLSDHLCVRKKSEGLNWEVRHKIMLGTAEGLSYLHEESQMRIIHRDIKLGNVLLDENFTPKIADFGLVRLFPEENSHLSTTIAGTLGYMAPKYVILGKLTEKADVYSFGVLVIEIVSDKKIRSILQNSISILHVVWNLYETKKLCEIVDPSLEGNYPAEEACKFLKIGLLCAQASPELRPSMSKVVKMIKGNNHEQIAEPTQPPFLNHCSAEFSRSILDTEPLYISNQSSKYFSAA	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151078g00016	655	ProSiteProfiles	Protein kinase domain profile.	340	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00016	655	FunFam	Cysteine-rich receptor-like protein kinase 3	152	256	-	-
	Stsc151078g00016	655	Pfam	Protein kinase domain	341	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00016	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Stsc151078g00016	655	FunFam	Cysteine-rich receptor-like protein kinase 2	416	616	-	-
	Stsc151078g00016	655	SMART	serkin_6	340	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151078g00016	655	CDD	STKc_IRAK	346	610	-	-
	Stsc151078g00016	655	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	88	635	-	-
	Stsc151078g00016	655	FunFam	Cysteine-rich receptor-like protein kinase 2	306	415	-	-
	Stsc151078g00016	655	Gene3D	Transferase(Phosphotransferase) domain 1	416	622	-	-
	Stsc151078g00016	655	SUPERFAMILY	Protein kinase-like (PK-like)	327	634	IPR011009	-
	Stsc151078g00016	655	ProSiteProfiles	Gnk2-homologous domain profile.	36	142	IPR002902	-
	Stsc151078g00016	655	Pfam	Salt stress response/antifungal	161	253	IPR002902	-
	Stsc151078g00016	655	Pfam	Salt stress response/antifungal	53	139	IPR002902	-
	Stsc151078g00016	655	Gene3D	Phosphorylase Kinase; domain 1	300	415	-	-
	Stsc151078g00016	655	ProSiteProfiles	Gnk2-homologous domain profile.	149	256	IPR002902	-
	Stsc151078g00016	655	Gene3D	-	38	142	IPR038408	-
	Stsc151078g00016	655	Gene3D	-	152	256	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151078g00016	Stsc-Chr151078	169831	172994	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151078g00016	29	505	Receptor kinase-like Gene Family	AT1G70530	53.862	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc151078g00016		Pkinase	9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151078g00016	-		-	aip:107643328	1141.33