Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151078g00013 ATGCTGTTACTATCAGAAACTTCAACGGCAGAACCAAGGGCGAAAACGATCCAAGTTACATGTGGCAATCAATTCGAGCACAACAACACTGTCTTTGTTCCGAATTTTGTTAAAGCCATGGACAATATCACTGCACAGATTAGCACTAATATCTTTGCAACAGCAGTTGCAGGAACAGGACCTGACACTAACTATGGCCTTTTTCAGTGCTATGGAGATCTTTCCTTATTCGATTGTGCATTGTGTAATGCCGAGGCACGCACGGTTATTGCCGGATGCTTCCCTTATAACGGTGGTCGCATTTACCTTGATGGCTGCTTCATGAGGGTTCAGAACTACAGATTTTTTAATCAGTATTCAGGAGCAGGAGACAAGGCTATATGTGGGAACACAACTAGGAAGAACTCGAGTTTTCAAGCAGCAGCAAAGCAAGCAATTTCAACAGCAGTTCAAGATGCACCAAACAACAATGGCTATGCTAGAAGTAAGGTTGCTGTGTCGGGAACAATCAATGAGTCCGCTTATGTTCTGACTAATTGTTGGAGGAATTTGGACCCGAGCTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCTATATTGGGATGCTTGCCTTGGTGGGAAGGGCGAGCGCTTAACACCGGTTGCTTCATGAGGTACTCAGACACAGATTTTCTCAACAAGGAACAGGAAAACGGGAGCTCAAAAGTGAATGTAGTGGTGCTAATTGTTCCAATAGCCAGTTCAGTGGTTGTTCTGGAGGCAAGTATGTTTAAGAATGTTTACTCATCTCGATCATCGTTCTGGCTTCAAGGTTCATATGATGCAAAAGAGCTAGCAAAGTCCCTTCACTGCAGTAGCTTGAATTTTAAGTACTCTACACTGGAAAAGGCTACTGGATCCTTTGATGATGCTAACAAGTTAGGCCAAGGAGGATTCGGAACAGTTTATAAGGGAGTTCTACCTGATGGAAGACAGATTGCTGTCAAGAGGTTATATTTCAACAACAGACATCGAGCTGCGGATTTCTACAATGAGGTTAACATAATCAGCCGAATAGAACACAAGAATCTAGTTAGACTGTTAGGATGCAGCTGTTCGCGACCTGAAAGCTTGCTCGTATATGAGTTTCTTCCCAATAGAAGTCTTGACCGCTTCATTTTCGACAAAAATAAGGGAAGGGAACTGAAATGGGAGAAGAGATATGAAATTATTGTTGGGACAGCTGAAGGACTAGTTTACCTGCATGAGAACTCTGAAATCAGGATAATCCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGTTCCGTGCGAAAATTGCAGATTTCGGTTTGGCTAGATCCTTTCAAGAAGACAAGAGCCACATAAGTACAGCTATAGCAGGAACTTTGGGTTATATGGCTCCAGAGTACTTAGCTCATGGTCAGTTAACAGAAAAGGTCGATGTTTATAGTTTCGGAGTGTTGCTGTTAGAGACAGTTACTGGAAGACAGAATGGCCGGGGCAAAGTAGCAATGGAATATTCGGACAGCACAGAATATTCAGAGAGCCTAGTTACAACGGTATGGAAGCATTTTCAGATGGGGACTGCAGAAGAATTATTTGATCCAAATCTTCAGTTGCATAACCACAACAGCAGCAATGTTAAGAATGAGGTTTTAAGAGTGGTTCATATAGGTCTTCTATGCACCCAAGAGAACCCTACACTGAGACCAACTATGTCAAAGGCACTACAGATGTTAACAAAGAAGGAGGAACACCTTGCTGCTCCCTATAATCCACCCTTCCTATATGAGAGTACTATGGAGCTGCATGACATGAGTAGCGACCCGTCTTCCCCTCTCAATATACCAGGATCGATTGCTACCGTGTCCCATAGCTCTTTTTATCCGAGGTGA 1908 0.4298 MLLLSETSTAEPRAKTIQVTCGNQFEHNNTVFVPNFVKAMDNITAQISTNIFATAVAGTGPDTNYGLFQCYGDLSLFDCALCNAEARTVIAGCFPYNGGRIYLDGCFMRVQNYRFFNQYSGAGDKAICGNTTRKNSSFQAAAKQAISTAVQDAPNNNGYARSKVAVSGTINESAYVLTNCWRNLDPSSCKACLENASSSILGCLPWWEGRALNTGCFMRYSDTDFLNKEQENGSSKVNVVVLIVPIASSVVVLEASMFKNVYSSRSSFWLQGSYDAKELAKSLHCSSLNFKYSTLEKATGSFDDANKLGQGGFGTVYKGVLPDGRQIAVKRLYFNNRHRAADFYNEVNIISRIEHKNLVRLLGCSCSRPESLLVYEFLPNRSLDRFIFDKNKGRELKWEKRYEIIVGTAEGLVYLHENSEIRIIHRDIKASNILLDAKFRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKVDVYSFGVLLLETVTGRQNGRGKVAMEYSDSTEYSESLVTTVWKHFQMGTAEELFDPNLQLHNHNSSNVKNEVLRVVHIGLLCTQENPTLRPTMSKALQMLTKKEEHLAAPYNPPFLYESTMELHDMSSDPSSPLNIPGSIATVSHSSFYPR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151078g00013 635 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Stsc151078g00013 635 ProSiteProfiles Gnk2-homologous domain profile. 120 225 IPR002902 -
Stsc151078g00013 635 FunFam Putative DUF26-domain receptor-like protein kinase family protein 274 377 - -
Stsc151078g00013 635 SMART serkin_6 302 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00013 635 Gene3D Phosphorylase Kinase; domain 1 268 377 - -
Stsc151078g00013 635 FunFam Cysteine-rich receptor-like protein kinase 3 124 225 - -
Stsc151078g00013 635 Pfam Salt stress response/antifungal 24 113 IPR002902 -
Stsc151078g00013 635 Pfam Salt stress response/antifungal 128 222 IPR002902 -
Stsc151078g00013 635 ProSiteProfiles Protein kinase domain profile. 302 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00013 635 CDD STKc_IRAK 308 586 - -
Stsc151078g00013 635 ProSiteProfiles Gnk2-homologous domain profile. 14 115 IPR002902 -
Stsc151078g00013 635 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 66 612 - -
Stsc151078g00013 635 Pfam Protein kinase domain 304 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00013 635 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Stsc151078g00013 635 Gene3D - 125 225 IPR038408 -
Stsc151078g00013 635 Gene3D - 13 115 IPR038408 -
Stsc151078g00013 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Stsc151078g00013 635 FunFam Cysteine-rich receptor-like protein kinase 2 378 592 - -
Stsc151078g00013 635 FunFam Cysteine-rich receptor-like protein kinase 2 14 115 - -
Stsc151078g00013 635 SUPERFAMILY Protein kinase-like (PK-like) 285 615 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151078g00013 Stsc-Chr151078 157134 160113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151078g00013 1 635 Receptor kinase-like Gene Family AT1G70520 63.240 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151078g00013 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151078g00013 - - gmx:100804094 971.844