Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151078g00011 ATGGAGGAAATGTACGGAGTCCCGTCCACGGCGGACTACGGCGAAAAAGCCTTCATGACGCCGGAGAATCTGATCTTCCCTGCAGCTGTCTACCACAACAGCTTCCTCATGTCCGCTTCCTCGTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCAACGAGCTTCTCTCCGCCGCCGGAATTCAACAGCAGCAGCAGCAGCCACCGCATAACAGCGAGGCCATGGCCTCCACCGTGATGAAAGCCAAAATCGCTTCTCATCCTCAATACCCTCGCCTCCTTCAAGCTTACATCGATTGCCAGAAGGTCGGCGCGCCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCAAGAAAACGACCTTTGCAAGAGAGACGACGTCGTTTCCACGTGCTTCGGAGCCGATCCCGAGCTCGATGAGTTCATGGTCATGGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCGATGAAGCAACAAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCCATCTCTGCTGCAACGGTGCTTCTGTTCCAACTCTTTCTGATGATGGGGCTGTGTCTTCAGAAGAAGATTTTAGTGCTGGAGATGGTGATGGTCAAGATGGTCAATCAAGAGGTGAGGATCGTGAGCTGAAGGATAGGCTTTTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCGAAGAAAAAAAAGAAGGGCAAGCTGCCCAAGGAAGCAAGGCAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTATCCTACGGAAGCGGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATNNNNNNNNNNTGCCCGATTCCTTCCTGATGAATGA 975 0.4974 MEEMYGVPSTADYGEKAFMTPENLIFPAAVYHNSFLMSASSSSSASAAAATIPMLGSNELLSAAGIQQQQQQPPHNSEAMASTVMKAKIASHPQYPRLLQAYIDCQKVGAPPEIACLLEEIRQENDLCKRDDVVSTCFGADPELDEFMVMETYCELLVKYKSDLARPFDEATSFLNKIEMQLSHLCCNGASVPTLSDDGAVSSEEDFSAGDGDGQDGQSRGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQXXXXARFLPDE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151078g00011 324 Pfam Homeobox KN domain 265 304 IPR008422 GO:0003677|GO:0006355
Stsc151078g00011 324 SMART KNOX2_2 134 187 IPR005541 GO:0003677|GO:0005634
Stsc151078g00011 324 SMART ELK_2 225 246 IPR005539 GO:0003677
Stsc151078g00011 324 Gene3D - 244 317 - -
Stsc151078g00011 324 SUPERFAMILY Homeodomain-like 246 315 IPR009057 -
Stsc151078g00011 324 ProSitePatterns 'Homeobox' domain signature. 283 306 IPR017970 GO:0000981|GO:0006355
Stsc151078g00011 324 SMART KNOX1_2 83 127 IPR005540 GO:0003677|GO:0005634
Stsc151078g00011 324 ProSiteProfiles ELK domain profile. 225 245 IPR005539 GO:0003677
Stsc151078g00011 324 SMART HOX_1 247 312 IPR001356 GO:0003677
Stsc151078g00011 324 CDD homeodomain 257 309 IPR001356 GO:0003677
Stsc151078g00011 324 Pfam KNOX1 domain 85 126 IPR005540 GO:0003677|GO:0005634
Stsc151078g00011 324 ProSiteProfiles 'Homeobox' domain profile. 245 308 IPR001356 GO:0003677
Stsc151078g00011 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 314 - -
Stsc151078g00011 324 MobiDBLite consensus disorder prediction 196 225 - -
Stsc151078g00011 324 Pfam KNOX2 domain 138 186 IPR005541 GO:0003677|GO:0005634
Stsc151078g00011 324 Pfam ELK domain 225 246 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151078g00011 Stsc-Chr151078 139880 148366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151078g00011 1 312 Homeobox Transcription Factor Family AT1G23380 62.229 5.31e-132 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc151078g00011 KNOX2 8.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151078g00011 - - gmx:100794719 432.95