Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151078g00005 ATGGAACATAGCAGTTTCGTTTCATGCCTCTTAGGTTCACTTCTTCTGCTCATGATGATGGAGATTTCTGCTGCTCTTCTTTCTCCTTCTGGCATAAACTATGAAGTTCTAGCTTTGATGGCTGTAAAGAATGACTTGGATGATCCTCACAATGTCCTGGAGAATTGGGATAGTAATTCTGTTGATCCTTGCAGCTGGAGGATGATTACTTGTAACCTAGATGGCTCTGTTTCTGCATTGGGAATGCCTAGTCAGAACTTGTCTGGTACTCTATCTCCTTCGGTTGGAAACCTTACTAATTTACAATCTGTGTTGCTTCAGAATAATGCAATTTCCGGTCAGATTCCTGCAGCAATTGGAAGCCTAGAAAAGCTTCAAACACTTGATCTCTCCAATAACGATTTTAGTGGCGAGATACCAAATTCTTTGGGAGGCCTCAAGAACCTGAATTATCTGAGATTGAATAATAACAGCTTTACAGGACCGTGCCCTCAGTCTTTAAGCAACATAGAAGGCTTAACCCTCTTGGACCTCTCCTACAATAATCTGAGTGGTTCCTTGCCAAGAATACCAGCAAGAACATTGAAGATTGTCGGAAATCCATTAATTTGTGGTCCGAAATCCAACAACTGCTCTACTTTACCTGAGCCACTTTCCTTCCCCCCAGATGCACTTAGAGGCCAATCAGATGGTAGTAGTAAGGAAAACCATCATGTGGCTGTTGCTTTTGGAGCAAGTTTTGGTGCTGCCTTTGTCTTCGTGATAATTATTGTGTTCCTTGTTTGGTGGCGGTATAGGCACAACAAACAGATTTTCTTCGATGTTAACGAGCAATATGATCCAGAGGTGCGCCTTGGCCATTTAAAAAGGTACACATTCAAAGAGCTTCGAGCCGCAACAGACCATTTCAACTCGAAGAATATCCTAGGTAGAGGTGGATTTGGAATAGTTTACAAGGCGCGCTTGACCGATGGGACTGTTGTAGCTGTTAAAAGGTTGAAGGACTACAATGCAGCAGGTGGTGAGATCCAGTTTCAGACAGAAGTCGAGACAATAAGTTTAGCTGTACACCGGAATCTTCTGAGGCTCTGCGGGTTTTGCAGTACTCAGAATGAAAGGCTTCTTGTTTATCCGTATATGGCTAACGGCAGTGTTGCCTCTAGATTGAAAGATCATATTCATGGTCAGCCAGCGTTGGATTGGACAAGGCGGAAGAGAATAGCGTTAGGTACAGCGAGAGGGTTGGTCTATTTGCACGAGCAATGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCCAACATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAACTTCTGGACCATAGAGATTCCCATGTGACCACTGCCGTGCGAGGCACGGTTGGTCACATTGCTCCTGAGTACCTATCCACAGGTCAGTCATCAGAAAAGACTGATGTATTCGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAGGCTCTAGATTTCGGGCGAGCAGCAAACCAGAAAGGCGTAATGCTTGATTGGGTTAAGAAGCTCCATCAGGATGGAAGACTAAATCAAATGGTTGACAAAGATCTAAAGGGAAACTTCGACCTTGTCGAATTAGAAGAAATGATGTTGGAAGGAGATGGCTTAGCTGAGAGATGGGAGGCCTCACAGAGGATTGAGACGCCGAGGTTCAGGTCCTGCGAAAGCCACCCTCAAAGATATTCGGATTTTATAGAGGAATCTTCACTCATAGTAGAAGCTATGGAGCTTTCTGGCCCTAGGTGA 1812 0.4404 MEHSSFVSCLLGSLLLLMMMEISAALLSPSGINYEVLALMAVKNDLDDPHNVLENWDSNSVDPCSWRMITCNLDGSVSALGMPSQNLSGTLSPSVGNLTNLQSVLLQNNAISGQIPAAIGSLEKLQTLDLSNNDFSGEIPNSLGGLKNLNYLRLNNNSFTGPCPQSLSNIEGLTLLDLSYNNLSGSLPRIPARTLKIVGNPLICGPKSNNCSTLPEPLSFPPDALRGQSDGSSKENHHVAVAFGASFGAAFVFVIIIVFLVWWRYRHNKQIFFDVNEQYDPEVRLGHLKRYTFKELRAATDHFNSKNILGRGGFGIVYKARLTDGTVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMANGSVASRLKDHIHGQPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLNQMVDKDLKGNFDLVELEEMMLEGDGLAERWEASQRIETPRFRSCESHPQRYSDFIEESSLIVEAMELSGPR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151078g00005 603 ProSiteProfiles Protein kinase domain profile. 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00005 603 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Stsc151078g00005 603 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Stsc151078g00005 603 SMART serkin_6 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00005 603 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
Stsc151078g00005 603 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Stsc151078g00005 603 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 552 - -
Stsc151078g00005 603 SUPERFAMILY Protein kinase-like (PK-like) 280 552 IPR011009 -
Stsc151078g00005 603 SUPERFAMILY L domain-like 33 202 - -
Stsc151078g00005 603 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 213 - -
Stsc151078g00005 603 FunFam Somatic embryogenesis receptor-like kinase 1 380 552 - -
Stsc151078g00005 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Stsc151078g00005 603 Pfam Protein kinase domain 304 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151078g00005 603 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Stsc151078g00005 603 Gene3D Transferase(Phosphotransferase) domain 1 380 572 - -
Stsc151078g00005 603 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151078g00005 Stsc-Chr151078 49369 53541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151078g00005 68 603 Receptor kinase-like Gene Family AT1G60800 72.183 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc151078g00005 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151078g00005 - - gmx:100784164 1018.84