Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151077g00020 ATGGACATAGACATGCTCGACATCCACAACCTTGATTTCTCCGGATACAGCACAACAACCACCACCACCACCAACACTCCCTCCTCCGATGAACACCCTGCCTACACCAACTGGTCCCACTGGTCCCCCGTAGTCAACTGGGAAGCCATCGCCGCCCCCCACGACGACTTCCACCACCTCATCGACTCCATCATCGACCACCACCACGCCTCCACTCCCTTCCATCTCACCCCCGACGACGACGATGAAGACGACACAACCACAACCAACACGGCCGACGACGAACCCTCACCACTTCCCACAACACCAACACCTACCATCGCCGCCGAAGACGAAACAAAAGGCTTGAGGCTAGTGCACCTCCTAATGGCCGCAGCAGAAGCCCTCACCGGCGCCACCAAGTGCCGTGACCTCGCTCGAGTGATATTGCTTCGACTCAAAGAGTTGGTTCCTTCCACCACCACCACCACCACCACTAGCGCCACCAACATGGAAAGACTCGCGGCGCATTTTACCCAGGCACTACAAGGTTTGCTAGATGGCGCAGGGGGTGGGGTTGGGGGTGCGCAAAATAATAACAACAACAACAAACAATACAGTTACGGGTCCCACCAAACGGAAATACTAACAGCATTCCAACTGCTTCAAGACATGTCCCCTTACGTCAAGTTCGCTCACTTCACCGCCAATCAGGCCATTCTTGAAGCCATCACAAACCATAGACGGGCCCACATAGTCGATTTCGACATCATGGAAGGTATCCAGTGGGCCTCACTCTTGCAGGCCCTCGCCTCCCAAAACAAAACAGGCCCACACCTCCGCATCACTGCATTGTCTAGAACCGGCTCAGGCCGGAGATCCATTGCCACTGTTCAGGAGACAGGCCGGAGGCTCACCGCCTTCGCCGCCTCCTTGGGCCAGCCCTTCTCCTTCCACCACTGCAGAACGGACCCCGACGAAACGTTTCGGCCCAACGGGCTGAAGGTAGTTCGTGGGGAGGCTTTGGTGTTCAATTGCATGCTCAACCTCCCGCATTTGCCTTACCGCGCGCGTGACTCGGTTGCGTCGTTCTTGAAGGGCGCGAAGGAGTTGAGCCCCGTGCTGGTGACGATGGCAGAAGAGGATGTTGGGCCCGTGGGAGCGGATGCTGGGTTTGTGGGCCGGTTCATGGACTCACTGCACTACTACTCGGCGTTTTATGATTCGCTGGAGGCCGGGTTCCCAATGGAGGGGCGGGCCCGGGCTTTGGTTGAACGGGTATTTCTTGGGCCTCGAATAGCGGGGTCGTTGGGGCGGATATACCGAACGAGTGAGGGGAAGGAGGAAAGAGGTTGTTGGGGAGAGTGGTTGTGTGGAATGGGGTTCAGGGGAGTACCTTTGAGCTCAGCCAATCAGAGCCAAGCGAAGCTTCTAATAAATCTGTTCAAAGACGGTTACAAATTGGAACAGTTAGGTCCGAATCAGTTAGTGTTGAGTTGGGAGTCACGCCGTTTGTTTTCTGCATCTGTTTGGTCTTCTTCTTCCTCTTGTTCTTCCTCCTCTCACTCTCACATTGAACCGTTGTAG 1566 0.5575 MDIDMLDIHNLDFSGYSTTTTTTTNTPSSDEHPAYTNWSHWSPVVNWEAIAAPHDDFHHLIDSIIDHHHASTPFHLTPDDDDEDDTTTTNTADDEPSPLPTTPTPTIAAEDETKGLRLVHLLMAAAEALTGATKCRDLARVILLRLKELVPSTTTTTTTSATNMERLAAHFTQALQGLLDGAGGGVGGAQNNNNNNKQYSYGSHQTEILTAFQLLQDMSPYVKFAHFTANQAILEAITNHRRAHIVDFDIMEGIQWASLLQALASQNKTGPHLRITALSRTGSGRRSIATVQETGRRLTAFAASLGQPFSFHHCRTDPDETFRPNGLKVVRGEALVFNCMLNLPHLPYRARDSVASFLKGAKELSPVLVTMAEEDVGPVGADAGFVGRFMDSLHYYSAFYDSLEAGFPMEGRARALVERVFLGPRIAGSLGRIYRTSEGKEERGCWGEWLCGMGFRGVPLSSANQSQAKLLINLFKDGYKLEQLGPNQLVLSWESRRLFSASVWSSSSSCSSSSHSHIEPL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151077g00020 521 ProSiteProfiles GRAS family profile. 109 505 IPR005202 -
Stsc151077g00020 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 96 501 IPR005202 -
Stsc151077g00020 521 Pfam GRAS domain family 118 504 IPR005202 -
Stsc151077g00020 521 MobiDBLite consensus disorder prediction 72 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151077g00020 Stsc-Chr151077 146925 148541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151077g00020 139 508 GRAS Transcription Factor Family AT3G54220 34.133 3.76e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc151077g00020 GRAS 2.8e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151077g00020 - - gmx:100787926 573.548