Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151077g00017 ATGTCTGTGAGTCCACCAAGACAAAGAAGCAACAGCAGCAACAACAACATCAATGGGTTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTCCGAGCCGCACAAGATAACAACCCATCCTGCCCACGCTGCTTTGGTCAATTCATCCAAGAAATCAACATGCCAACACCAAGACTCTTCCTTGATTTCACCCCCAACGATCCTTCTCCACACCCGCGTCTTCTAGAAGCTCTATCTCTCATGCTTGATCCCGCTTTCCAACAACCTCGCCGCCGCCCCCGCATCCGCCGCCGCCAACCTTCCGACACGCCTGACCCCAACCCTACAACTCGTCCCCGGACCTGGATCATTGTCCATCCCATCGGTGCTTCCCCGGAGGAGCTCGAATCCATGGTTCCGCCGCCGCGCCGCGACCGTCCGGTGGTCCCGCGCGGGGTGGACTCGAGGGACTACTTTCTTGGTCCTGGATTAAACGAGCTGATCGAGCAGATTACTGAGAACGATAGGCCGGGTCCGGCGCCGGCACCGGAGAGCGCGATAAGGGGGATACCTCGGGTGAAGATAGAGGGGCATCATCTAAAGGAGAATTCGCAGTGTCCGGTTTGTCAAGAAGAGTTTGAGGTTGGTGAGGAAGTGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCGTGGCTCAGGCTTCATAATTCTTGTCCTGTTTGCCGCCATGAGGTGCCCGATCATGATGATGATGAGTGTGCTGGTGAGGGTAGGTTTCGGAGGTGCTTGAGGTGGACGAGGATTTCTTCTCTTTGGCCCTTCCATCACCGTCGACGTGTTCATCCTGCTGCTGCTACTACTACTGCTTATCCAGAAGGAGGAGGAGGGAATAACAATAATAATAATAATGCTTCTGGTTCTGGTTCTACTTCTACTGCTTCTCCCCGTGCAGGTAATAATCCAAGACGCTCTTGCAACATTCTTTAA 984 0.5335 MSVSPPRQRSNSSNNNINGFQLYWCFQCNRMVRAAQDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNDPSPHPRLLEALSLMLDPAFQQPRRRPRIRRRQPSDTPDPNPTTRPRTWIIVHPIGASPEELESMVPPPRRDRPVVPRGVDSRDYFLGPGLNELIEQITENDRPGPAPAPESAIRGIPRVKIEGHHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDHDDDECAGEGRFRRCLRWTRISSLWPFHHRRRVHPAAATTTAYPEGGGGNNNNNNNASGSGSTSTASPRAGNNPRRSCNIL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151077g00017 327 MobiDBLite consensus disorder prediction 286 327 - -
Stsc151077g00017 327 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Stsc151077g00017 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 245 - -
Stsc151077g00017 327 SMART ring_2 200 240 IPR001841 -
Stsc151077g00017 327 MobiDBLite consensus disorder prediction 84 114 - -
Stsc151077g00017 327 MobiDBLite consensus disorder prediction 290 327 - -
Stsc151077g00017 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Stsc151077g00017 327 FunFam E3 ubiquitin-protein ligase RING1-like 163 247 - -
Stsc151077g00017 327 CDD RING-H2_RNF126-like 199 241 - -
Stsc151077g00017 327 SUPERFAMILY RING/U-box 181 247 - -
Stsc151077g00017 327 Pfam Ring finger domain 199 241 IPR001841 -
Stsc151077g00017 327 Pfam zinc-ribbon 21 53 IPR039525 GO:0061630
Stsc151077g00017 327 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151077g00017 Stsc-Chr151077 107684 109046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151077g00017 139 255 C3H Transcription Factor Family AT5G01980 42.017 1.05e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151077g00017 K11982 - gmx:100787399 313.153