Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151077g00010 ATGGTTAAGGCAGAACAGAAGATCCAAAGAGAGACATCATCATCATCATCAGAAATAATGAAGAATAATAATAAGCAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGATCATGGGTTTCAGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGTTCATATTCAACTGCTGAAGCTGCTGCTAGAGCCTATGATGCTGCACTTCTTTGTCTTAAAGGCTCTTCTGCAAATCTCAATTTCCCATCATTAACAGAATCTAATTACATTAACATCATCCCCAATCATCTTCAACATCATTCTTCTTCTTCTTCTTCTTCTTCAGCTGCTCCTCCTATGTCTCCAAAATCAATACAAAGAGTTGCTGCTGCTGCTGCTAATTGCAGCTTTCTTGATGACATCAACAATGCTACAACACCTTCTTCTTCTTATTCTTCATCTTCATCATCATCATCATTGGTGTCATCACCATCAATGGTTTCTTCTCCCTCTGAACAAACTGATGATGATGTTGCTCATGCATCACTCATATCTTCTTCTACTACTACTACTACTACTTTTGGGGCATGCACTGCTACTACAAGCTGTGATGAATCCATGGCTATGATGGAACCTTGGTACAACAACACCTTTGATGATGCTCTTGATCAGATGCTCACCGGTGCTGCTGCTGGTTTCTTTGATCTTGATTCATCTCACCTTCTTCCTGATCTATATGAAGAAGAAACTGACATTCGTTTGTGGAGTTTCTGCTAG 765 0.3987 MVKAEQKIQRETSSSSSEIMKNNNKQKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSLTESNYINIIPNHLQHHSSSSSSSSAAPPMSPKSIQRVAAAAANCSFLDDINNATTPSSSYSSSSSSSSLVSSPSMVSSPSEQTDDDVAHASLISSSTTTTTTFGACTATTSCDESMAMMEPWYNNTFDDALDQMLTGAAAGFFDLDSSHLLPDLYEEETDIRLWSFC 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151077g00010 254 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Stsc151077g00010 254 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Stsc151077g00010 254 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Stsc151077g00010 254 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 176 - -
Stsc151077g00010 254 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Stsc151077g00010 254 FunFam ethylene-responsive transcription factor ERF014-like 27 87 - -
Stsc151077g00010 254 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Stsc151077g00010 254 MobiDBLite consensus disorder prediction 7 22 - -
Stsc151077g00010 254 MobiDBLite consensus disorder prediction 143 172 - -
Stsc151077g00010 254 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Stsc151077g00010 254 CDD AP2 31 85 IPR001471 GO:0003700|GO:0006355
Stsc151077g00010 254 MobiDBLite consensus disorder prediction 1 30 - -
Stsc151077g00010 254 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151077g00010 Stsc-Chr151077 87877 88944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151077g00010 1 253 AP2-EREBP Transcription Factor Family AT1G21910 41.935 2.32e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151077g00010 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151077g00010 - - gmx:100813313 233.032