Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151076g00021 ATGGAAGTCGACAACAATTACAATAATAAAGAGAAATTAGAAGAAAGTAGTGTGAAGGTGGCTTTACACTTAGGGCTTCAAAGCACAGGTTGTTCAAGCATAATTTACTCATCATCACACAAACAAGAACAAGAAGAAGAAGAAGAAAAAATTATTGCTTGTGAGTATGGTGTATTGTCAAATGGAATTAACAGAGGACAGTATTGGATCCCAACACCAACTCAGATCCTCATCGGTCCTACACAGTTCGCATGCCCCCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAATCTCTGAGGGGAACACAACCAACAGCAATGTTGAAACTGCCATGTTATTGCTGTGCACCAGGATGCAAGAATAACATAGACCACCCAAGAGCAAAACCCCTCAAAGATTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGTCTTAAACCCTTCTCTTGTAGGAAGTGTTCCAAGGCTTTTGCTGTTAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGTAAGCGATGGTATTGTTCTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAGGATCATATCAAGGCTTTTGGAAATGCACACAGACCTTCTTTTGGAATTGATGATCACCATCATGGTGTTGTTGTTGATGATCAAGATGATAGAGCTGCCTCTGAAGTTGAAGAAAATGATTCATTCAACTCCTAA 759 0.4032 MEVDNNYNNKEKLEESSVKVALHLGLQSTGCSSIIYSSSHKQEQEEEEEKIIACEYGVLSNGINRGQYWIPTPTQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFSCRKCSKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGNAHRPSFGIDDHHHGVVVDDQDDRAASEVEENDSFNS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151076g00021 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Stsc151076g00021 252 Gene3D Classic Zinc Finger 130 220 - -
Stsc151076g00021 252 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Stsc151076g00021 252 Gene3D Classic Zinc Finger 82 105 - -
Stsc151076g00021 252 SUPERFAMILY beta-beta-alpha zinc fingers 78 105 IPR036236 -
Stsc151076g00021 252 PANTHER ZINC FINGER PROTEIN WIP2 8 247 IPR043584 GO:0003700|GO:0010468
Stsc151076g00021 252 FunFam Zinc finger protein WIP2 136 218 - -
Stsc151076g00021 252 SUPERFAMILY beta-beta-alpha zinc fingers 149 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151076g00021 Stsc-Chr151076 152571 155295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151076g00021 45 249 C2H2 Transcription Factor Family AT3G57670 76.098 1.86e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151076g00021 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151076g00021 - - vum:124825208 375.555