Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151076g00017 ATGAACTCATCATCTTCAAACAACAATAATAACTGGCTATCTTTCCCCCTTTCACCAACTCATCCTCCTCAATATCATCAATTCCCTCTTGGATTTGTCAATGACACCATCGAAAACCCTTTCCACAATCATGATTGGAGTAATGTGATAAATGGTGGAGAGAGCAGCAATAAGAATAAGAATGATGAAGCAGAAGCAGTAGTTCCAAAGGTAGCTGATTTCCTTGGTGTAAGGAAGGCAGAGGAAGATTCATCATCATCAGATCTTGTTGCCCTCACAACACAAATTCATCATCATGATGATCAATACCTCTCCACTCTCTTGCCCTTGCACACAGTTGCCAACATCAACATCAACAATAATAATCTGCAAGCACTCACATTGTCCATGGCAAGTGGTAGCAATAATAATAATAAGGATTCAACAACAACAAGCTGTGACAATAACAGCAGCAGCACCAACATCACTGTTGAAGCACCACCTGCTAATAACAGAAGAACACTAGATACATTTGGCCAGAGAACTTCAATCTACCGTGGAGTAACTAGACATAGATGGACTGGAAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAGGGTCGCCAAGGTGGATATGATAAGGAAGATAAAGCAGCTAGGGCTTATGATTTGGCTGCATTGAAGTACTGGGGAACATCCACTACTACCAACTTTCCTATCAGCAACTATGAGAAGGAATTGGAAGAAATGAAACACATGACAAGACAAGAATTTGTAGCCGCTATAAGAAGGAAAAGTAGTGGATTCTCCAGAGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACATGGGAGATGGCAAGCAAGGATTGGAAGGGTTGCAGGAAACAAAGATCTTTATCTAGGAACATTTAGTACGGAAGAAGAGGCAGCAGAAGCTTATGACATAGCAGCCATAAAGTTCAGAGGTCTTAACGCCGTTACAAACTTCGACATGAGCCGTTACGACGTCAAAGCCATTCTTGAAAGCAATGCTCTCCCTATTGGAGGCGGTGCTGCTAAGAGATTGAAAGAAGCACAAGCTTTGGAATCTTCTAGAAAACGAGACGAGTTGCTTGCGCTTGCAGCAGGAGTATCAGGAGGAGGAACATCTTCTGCTTCTTTTCATCATCATCATAATAACTATGGAGGACTTGGTGCCTCTTCTTCTTCTTCTACAAGGTTCCCTCTCATGCATCATCATCAAGAACAACTTCAGATTCAACCATTGTTAACCCTACAGAACCACTACCACGATAATGTTTCTCATCATTATCAATTCATGCATCATCATCATCAGGATCCTTCTTCTTCTCCTAATTCTTCTTCATCGTCTCTTCATCAGAGCTATCTCCAAACGCAGATTCAGTTGCACCAACAGAATGCTCAGTTTTACAACAATTACCTTCATGGAATGTTCAACAATATTGGTTCTTCTTCTCCTTCTTCTTTTTCGCTCATGGATAACAATAATAATAATAACATGCTTGCTGGTTTGGGTTCCAACTCTTCTTCCGGTAACGTAGTGGGATCATCTTCCAGGGAGGAACTTGGCTTGGTTAAGGTTGATTATGATATGAATCCCGGCGGTGGCTATGGCGGTTGGTCAGGGACCGCCGAGACAGCGTCGGAGTCCTTGCAGGGACAAAATGGCGGTGTTTTTACAATGTGGAATGAATAA 1728 0.4207 MNSSSSNNNNNWLSFPLSPTHPPQYHQFPLGFVNDTIENPFHNHDWSNVINGGESSNKNKNDEAEAVVPKVADFLGVRKAEEDSSSSDLVALTTQIHHHDDQYLSTLLPLHTVANININNNNLQALTLSMASGSNNNNKDSTTTSCDNNSSSTNITVEAPPANNRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNALPIGGGAAKRLKEAQALESSRKRDELLALAAGVSGGGTSSASFHHHHNNYGGLGASSSSSTRFPLMHHHQEQLQIQPLLTLQNHYHDNVSHHYQFMHHHHQDPSSSPNSSSSSLHQSYLQTQIQLHQQNAQFYNNYLHGMFNNIGSSSPSSFSLMDNNNNNNMLAGLGSNSSSGNVVGSSSREELGLVKVDYDMNPGGGYGGWSGTAETASESLQGQNGGVFTMWNE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151076g00017 575 CDD AP2 176 242 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 MobiDBLite consensus disorder prediction 448 465 - -
Stsc151076g00017 575 FunFam AP2-like ethylene-responsive transcription factor ANT 176 242 - -
Stsc151076g00017 575 MobiDBLite consensus disorder prediction 134 163 - -
Stsc151076g00017 575 PRINTS Ethylene responsive element binding protein signature 178 189 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 PRINTS Ethylene responsive element binding protein signature 316 336 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 SUPERFAMILY DNA-binding domain 275 336 IPR016177 GO:0003677
Stsc151076g00017 575 ProSiteProfiles AP2/ERF domain profile. 276 334 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 FunFam AP2-like ethylene-responsive transcription factor 275 336 - -
Stsc151076g00017 575 Gene3D AP2/ERF domain 177 242 IPR036955 GO:0003700|GO:0006355
Stsc151076g00017 575 Gene3D AP2/ERF domain 276 336 IPR036955 GO:0003700|GO:0006355
Stsc151076g00017 575 ProSiteProfiles AP2/ERF domain profile. 177 240 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 441 - -
Stsc151076g00017 575 SMART rav1_2 177 246 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 SMART rav1_2 276 340 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 SUPERFAMILY DNA-binding domain 176 242 IPR016177 GO:0003677
Stsc151076g00017 575 Pfam AP2 domain 177 232 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 Pfam AP2 domain 277 326 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 CDD AP2 275 336 IPR001471 GO:0003700|GO:0006355
Stsc151076g00017 575 MobiDBLite consensus disorder prediction 443 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151076g00017 Stsc-Chr151076 127200 129788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151076g00017 8 575 AP2-EREBP Transcription Factor Family AT1G51190 56.501 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc151076g00017 AP2 1.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151076g00017 K09285 - gmx:100788471 612.453