LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151076g00016	ATGTCTTCCAACGACATGATGGATTTCCCATTACCACCCTCACCACCACCAACCCCTCATCCTCACCCTCCTCCTCTTCAACCTCTTAACCTAGACAACCTTAAAGCCCTCAAAATCCTTGGCAAAGGTGCCATGGGCACCGTCTTCCTCGTCCAGGACCCCACCACCACCTTCTTTGCCCTCAAGGTCGTCGAGAAAACCACCCTCCACGGCAAACTTGACGCCGACCGCCGCGCCCGCTGGGAAATCGAAGTCCTCTCCAAGCTCTCCGGTCACCCCTTCCTCCCTTCCCTCCTCGGCTCCCTCAACACCCCAGACTTCCTCGCCTGGGCCCTACCTTATTGCCCCGGCGGAGATCTCAACCGCCTTCGCTACCACCAGACCGACCGCGTGTTCTCCCCGTCCGTCATCCGGTTCTACCTAGCTGAAATCCTGTGCGCCCTCCATCACCTCCATTCCCTGGGCATCGCTTACAGAGACCTCAAACCAGAAAATGTCCTTATCCAACATAACGGTCACGTGACTCTCACGGACTTCGACCTCTCACGCAAACTCACGCGCAAAACCGTTGCAACAACTTCTCAAACCGATGTGGCAGTTGCAACTGACATTTCCAACAAACCTAACAGCATTCCTCCCACGGATCCCAACAAGATTCCGTCAGAACCTCCTCATCGGAGGAGACACCGCCGGAACTTCACACGGTGGTTCCCTCTCCAAACGCCCGATGCAGCTCGCAAGAACGCCTTGAAGAAAGTGAAGTCCGCCAGAGTCAGTCCGGTGAGTCGACGCAGGACGAGCTTCGTCGGCGGCGGCGAGAGGTCAAACTCGTTCGTCGGCACCGAGGAGTACGTGGCGCCAGAGGTGGTGCGCGGCGAGGGACATGATTTCGCGGTGGATTGGTGGGCGCTGGGGATTCTGGCGTACGAGATGATGTACGGTACGACGCCGTTTAAGGGGAAGAACCGCAAGGATACGTTCCGGAATGTGTTGGTGAAGTCGCCGGAGTTCGTTGGAGAAAGGTCGTCGCTGACGGATCTCATCGAGAAGCTTCTGGAGAAGGATCCGGCGGCGAGATTGGGGTACACTCGTGGCGCCGACGAGATCAAGGAGCACAAGTTCTTTCATGGTGTGAGGTGGGACATGTTGACGGAGGTGGTGCGGCCGCCGTTCATTCCGGCCAGGAACGACCCCGGTGCCGGTGAACCGATGGAGAATTTGGCAGGTGGAGAGGGCGGCGTGAACATTAGGGATTATTTTCAGAGGTTGCGGTTGCCGCCGTCATTGCCTCCGTCGCCGTTGCCCTCGCCGTCCGGCAAGTTCAAGAGGAATGTTTCTCTATCGGAATTCTAA	1353	0.5758	MSSNDMMDFPLPPSPPPTPHPHPPPLQPLNLDNLKALKILGKGAMGTVFLVQDPTTTFFALKVVEKTTLHGKLDADRRARWEIEVLSKLSGHPFLPSLLGSLNTPDFLAWALPYCPGGDLNRLRYHQTDRVFSPSVIRFYLAEILCALHHLHSLGIAYRDLKPENVLIQHNGHVTLTDFDLSRKLTRKTVATTSQTDVAVATDISNKPNSIPPTDPNKIPSEPPHRRRHRRNFTRWFPLQTPDAARKNALKKVKSARVSPVSRRRTSFVGGGERSNSFVGTEEYVAPEVVRGEGHDFAVDWWALGILAYEMMYGTTPFKGKNRKDTFRNVLVKSPEFVGERSSLTDLIEKLLEKDPAARLGYTRGADEIKEHKFFHGVRWDMLTEVVRPPFIPARNDPGAGEPMENLAGGEGGVNIRDYFQRLRLPPSLPPSPLPSPSGKFKRNVSLSEF	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151076g00016	450	SMART	serkin_6	34	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151076g00016	450	Gene3D	Transferase(Phosphotransferase) domain 1	249	399	-	-
	Stsc151076g00016	450	ProSitePatterns	Protein kinases ATP-binding region signature.	40	62	IPR017441	GO:0005524
	Stsc151076g00016	450	MobiDBLite	consensus disorder prediction	1	28	-	-
	Stsc151076g00016	450	MobiDBLite	consensus disorder prediction	203	230	-	-
	Stsc151076g00016	450	SUPERFAMILY	Protein kinase-like (PK-like)	17	393	IPR011009	-
	Stsc151076g00016	450	Gene3D	Transferase(Phosphotransferase) domain 1	30	203	-	-
	Stsc151076g00016	450	ProSiteProfiles	Protein kinase domain profile.	34	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151076g00016	450	MobiDBLite	consensus disorder prediction	9	28	-	-
	Stsc151076g00016	450	Pfam	Protein kinase domain	272	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151076g00016	450	Pfam	Protein kinase domain	36	193	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc151076g00016	450	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	156	168	IPR008271	GO:0004672\|GO:0006468
	Stsc151076g00016	450	MobiDBLite	consensus disorder prediction	424	450	-	-
	Stsc151076g00016	450	PANTHER	FLIPPASE KINASE 1-RELATED	29	395	-	-
	Stsc151076g00016	450	FunFam	Serine/threonine-protein kinase OXI1	273	394	-	-
	Stsc151076g00016	450	FunFam	Serine/threonine-protein kinase OXI1	119	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151076g00016	Stsc-Chr151076	109281	110633	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151076g00016	29	450	AGC Kinase Gene Family	AT3G20830	56.120	8.65e-153	438

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Stsc151076g00016		Pkinase	6.1e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151076g00016	-		K08286	adu:107476791	739.569