Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151076g00012 ATGGAATCAGATCTTCACCGTCACCCTCCTATGTTCTTGGATCACCACCCCCACCACCACCACAACCAGCAGATGAACAGCAACACCAATAGCAGCAACAACTCTTCTTCGGGGCTAACGAGGTTTCGATCGGCACCAAGTTCGTATTTTTCTAGCATCATTGATAAGGAATTCTACGAAAGCATCTTCAACAAGCCTTCAAGCCCCGAAACTGAAAAAATCCTTGCTCGCTTCATGAATAGTCTTGCAAATGATGAACCTGAAGATCAAGATTCATTACTTTCAACACCTCCTGCTACTACTAATAATAATAATATTAATAATATTAATATTAATAATAATGATAATAAAAATATGTCACCGTCACTGCAACCGCCACAAGAAGTAGTGCAGCAAATCTGTCAAGTGAAGCAAGAAGAGATTAGTGTTAGTGTTAATACCAATAATACCCTTCAGCAAACTCCGCAGCAGATGAATAGTTTGAGTAACAGTTATGGAGGTTTGAGTGGTAATAATAATCCTCCAAATCCAAGTCAGACTTTCTATCAAAGTTCAGGGAGACCACCTTTGCCGAATCAGATGAAGACTGGGCGTGGAAATGCTTCTAATCTTATTAGGCATGGTAGTTCACCTGCTGGACTCTTTTCAAACTTGAACATTGAAGGCTATGCTGCTGCTTTAAGAGGCATGGGAACCATGGGAGCTGCTGCTAGCAACACTAGTGAGGATGCGAATTTTTCGCCTTCGGCGGCGAGGTTGAAGAATCCATCACCCTTTACATCCTCAGGGATGATGACCCCGATAGCCGAAATCAGGAACACTGCCAATACACTAAACAATCCAGACACTCCTGAAGCTTTTGCAGAGAGCCAGGACAGCGATTTTATCTCGGGGTTACCTTCTTGGGACGATTCTTCTTCTTCGATGATGTCTGACAACATTGCTGGTCGGAAAAGATTTAGAGACGACGACGTGAAACCATTTGCCGGAGTGAATGCAGCCGACACTCAGGTTAAGACCGAAGCAGGGCAGGCTCCTGCTGCTCCTTTGGCTCACCAGTTGAGTATGCCGAACACACCATCTGAGCTAGCAGCCATTGAGAAGTTTCTCCAATGCTCGGATTCTGTCGTGTGCAAGATTCGGGCCAAGCGGGGCTGTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAAAATTAGTGAGAGAATGAGGAAACTACAAGATCTCGTCCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATCAAAGAACTTCAAAACCAAGTTGAGACTCTTTCGGACAATCAAGCCAAGTGCACATGTGCACACAAGAAGCAACAATAA 1377 0.4423 MESDLHRHPPMFLDHHPHHHHNQQMNSNTNSSNNSSSGLTRFRSAPSSYFSSIIDKEFYESIFNKPSSPETEKILARFMNSLANDEPEDQDSLLSTPPATTNNNNINNININNNDNKNMSPSLQPPQEVVQQICQVKQEEISVSVNTNNTLQQTPQQMNSLSNSYGGLSGNNNPPNPSQTFYQSSGRPPLPNQMKTGRGNASNLIRHGSSPAGLFSNLNIEGYAAALRGMGTMGAAASNTSEDANFSPSAARLKNPSPFTSSGMMTPIAEIRNTANTLNNPDTPEAFAESQDSDFISGLPSWDDSSSSMMSDNIAGRKRFRDDDVKPFAGVNAADTQVKTEAGQAPAAPLAHQLSMPNTPSELAAIEKFLQCSDSVVCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKELQNQVETLSDNQAKCTCAHKKQQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151076g00012 458 MobiDBLite consensus disorder prediction 85 106 - -
Stsc151076g00012 458 SMART finulus 392 442 IPR011598 GO:0046983
Stsc151076g00012 458 MobiDBLite consensus disorder prediction 1 42 - -
Stsc151076g00012 458 Coils Coil 426 453 - -
Stsc151076g00012 458 Pfam Helix-loop-helix DNA-binding domain 391 437 IPR011598 GO:0046983
Stsc151076g00012 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 389 447 IPR036638 GO:0046983
Stsc151076g00012 458 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151076g00012 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 436 IPR011598 GO:0046983
Stsc151076g00012 458 MobiDBLite consensus disorder prediction 23 42 - -
Stsc151076g00012 458 Gene3D - 387 458 IPR036638 GO:0046983
Stsc151076g00012 458 MobiDBLite consensus disorder prediction 242 262 - -
Stsc151076g00012 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 453 - -
Stsc151076g00012 458 MobiDBLite consensus disorder prediction 148 197 - -
Stsc151076g00012 458 FunFam Transcription factor bHLH130 family 387 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151076g00012 Stsc-Chr151076 77792 82071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151076g00012 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.418 6.09e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151076g00012 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151076g00012 - - adu:107476789 650.973