Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151076g00011 ATGGAATCAGATCTTCACCGTCACCCTCCTATGTTCTTGGATCACCACCCCCACCACCACCACCAGCAGCAGAACAACAGCAGCAGCAACAACAATTCTTCTTCGGGGCTAACGAGGTTTCGATCGGCACCAAGTTCGTATTTTTCTAGCATCATTGATAAGGAATTTTACGAAAGCATCTTCAACAAGCCTTCAAGCCCCGAAACTGAAAAAATCCTCGCACGCTTCATGAATAGTCTTGCAAATGATGAACCTGAAGATCAAGATTCATTGCTTGCAGCTCCTGCTACTACTACTACTAATAATAATATTAATAATAATAAAAATTTGTCACAGTCACCACAACCGCCACAAGAAGTAGTTCAGCAAATCTCTCAAGTGAAGCAAGAAGAGATTAGTAGTGTTAATACCAATAATACCCTTCAGCCTTTGCCTTCAATGAATAATGAATCGTTGGTGCAGATGAATAGTTTGAGTAACAATTATGGATCTTTGAGTGGTAATAATCCAAATCCTCCAACTCAGAGTTTCTATCAAAGTTCAGGAAGACCACCTTTGCCGAATCAGATGAAGACTGGTCGTGGAAATGCTTCTAATCTTATTAGGCATGGTAGTTCACCTGCTGGTCTCTTTTCAAACTTGAACATTGAAGGCTATGCTGCTGCTTTAAGAGGCATGGGAACCATGGGAGCTGCTGCTAGCAACACTAGTGAGGATGCGAATTTTTCTCCTTCGGCGGCGAGGTTGAAGAATCCATCCACCTTTACATCTTCAGGGATGATGACCCCAGTAGCCGAAATCAGGAACACAGCCAATACACTAAAGAATCCAGATACTCCTGAAGCTTTTGCAGAAAGCCAGGACAGCGATTTTATGTCGGGGTTACCTTCTTGGGACGATTCCTCTTCTTTGATGATGTCGGACAATATTGCTGGTCGGAAAAGATTTAGAGATGACGACGTGAAACCATTCGTCGGAGTGAATGCGACCGACACTCAGGTTAAGACCGAAGCAGGACAGGCTCCTGCTGCTCCTTTGGCTCACCAATTAAGTATGCCAAACACACCGTCGGAGCTAGCAGCCATTGAGAAGTTTCTCCAGTGCTCGGATTCTGTCGTGTGCAAGATTCGGGCCAAGCGGGGCTGTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAAAATTAGTGAGAGAATGAGGAAACTACAAGATCTCGTCCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATCAAAGAACTTCAAAACCAAGTTGAGAGTCTTTCGGACAGTCAAGCCAAGTGTACGTGTGCACACAAGAAGCAACAATAA 1365 0.4418 MESDLHRHPPMFLDHHPHHHHQQQNNSSSNNNSSSGLTRFRSAPSSYFSSIIDKEFYESIFNKPSSPETEKILARFMNSLANDEPEDQDSLLAAPATTTTNNNINNNKNLSQSPQPPQEVVQQISQVKQEEISSVNTNNTLQPLPSMNNESLVQMNSLSNNYGSLSGNNPNPPTQSFYQSSGRPPLPNQMKTGRGNASNLIRHGSSPAGLFSNLNIEGYAAALRGMGTMGAAASNTSEDANFSPSAARLKNPSTFTSSGMMTPVAEIRNTANTLKNPDTPEAFAESQDSDFMSGLPSWDDSSSLMMSDNIAGRKRFRDDDVKPFVGVNATDTQVKTEAGQAPAAPLAHQLSMPNTPSELAAIEKFLQCSDSVVCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKELQNQVESLSDSQAKCTCAHKKQQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151076g00011 454 MobiDBLite consensus disorder prediction 238 259 - -
Stsc151076g00011 454 Gene3D - 383 454 IPR036638 GO:0046983
Stsc151076g00011 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 382 432 IPR011598 GO:0046983
Stsc151076g00011 454 SMART finulus 388 438 IPR011598 GO:0046983
Stsc151076g00011 454 MobiDBLite consensus disorder prediction 23 40 - -
Stsc151076g00011 454 Coils Coil 422 442 - -
Stsc151076g00011 454 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151076g00011 454 Pfam Helix-loop-helix DNA-binding domain 387 433 IPR011598 GO:0046983
Stsc151076g00011 454 MobiDBLite consensus disorder prediction 97 186 - -
Stsc151076g00011 454 FunFam Transcription factor bHLH130 family 383 452 - -
Stsc151076g00011 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 43 449 - -
Stsc151076g00011 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 385 444 IPR036638 GO:0046983
Stsc151076g00011 454 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151076g00011 Stsc-Chr151076 62800 66673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151076g00011 1 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.748 2.82e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151076g00011 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151076g00011 - - adu:107476789 694.115