Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151076g00003 ATGTCGTCAACCACCACCTCTCACGGCGGCGACTTCGAAACACCGACAATGGACAAGGAGTCCGCCGAGCTCCTCCAAACCATATCGGAGCACGGCGGCTACGCCTACGTCAGAATGGCATCGCAGGCGGCTGCCGGCGACATACGCGCCGCGGAGGCAGCGCTGGAGATGGCGTGGGAGCAGCTGCACTCAGGTCCGTGGCAGTCGGTGCTTCCGGTGTGGCGCGACGCTTACTCGATGGCGTGCCTCCACGTGGCAAGACACCACAACGGTAACGGCGAGTTCAAGGAGGCGCTTAGGGTTCTTGACTTGGGGATCATCATGGGAGGCACGCTCCTCAGAAAGGATTTGGACTCTGCGATCGACAAGGTTTCAGAGAGAGCCAAGAGTTCTCGTAGGGTTTCTGAGGGAAGCTTCCAAGAAGGTTCGGTCAACAACTCCGACCAACGGAGGCTTGTTCCTCTGGAATTTCATGTGTCTCAGGTGCTCCAACTTTTACCTGTCAAGTCCCTTTCTTCTAAGGTTGTGGAGAAGAAATCTGGCTTGTCGCTGGACAAGTTCTTGAAAGATCATTACCTGGCTGCTACACCGGTTATTATCAGTGATTGTATGGCTCACTGGCCGGCCAAGATGAAATGGAACAACATAGATTATTTGCTAAGAGTTGCTGGCGATCGAACAGTTCCCGTTGAGGTTGGTAAGAACTATTTATGTACAGACTGGAAGCAAGAGCTAATTACATTTTCAGAGTTACTTCAGCGTATAAAATCCAATGGCGGTTCTCCTGGGGGTCCTACATATCTTGCCCAGCATCCATTATTTGATCAAATAAATGAGCTTCGGAAAGATATCTTCATTCCTGACTATTGTTTTGCCGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACTCCATTACACCATGACCCACATCATAACATACTAGCTCAGGTTGTTGGGAAGAAGTACATTAGGCTTTACTCAGCATCTTTGTCTGAGGAACTTTACCCCTACTCGGAGACGATGCGTACCAATTCCAGCCAGGTTGACTTAGATGACATAGATGAAGGGAAGTTTCCTGAAGTGCAAGACTTGGAATTTATAGACTGTATTTTAGAGGAAGGTGATATGCTATATATCCCACCAAAGTGGTGGCACTATGTGCGATCTCTAACTACAAGTTTCTCAGTTAGCTTCTGGTGGAGTGAGGGTGAATATTCAGATACATCCTAA 1254 0.4912 MSSTTTSHGGDFETPTMDKESAELLQTISEHGGYAYVRMASQAAAGDIRAAEAALEMAWEQLHSGPWQSVLPVWRDAYSMACLHVARHHNGNGEFKEALRVLDLGIIMGGTLLRKDLDSAIDKVSERAKSSRRVSEGSFQEGSVNNSDQRRLVPLEFHVSQVLQLLPVKSLSSKVVEKKSGLSLDKFLKDHYLAATPVIISDCMAHWPAKMKWNNIDYLLRVAGDRTVPVEVGKNYLCTDWKQELITFSELLQRIKSNGGSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASLSEELYPYSETMRTNSSQVDLDDIDEGKFPEVQDLEFIDCILEEGDMLYIPPKWWHYVRSLTTSFSVSFWWSEGEYSDTS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151076g00003 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 76 411 - -
Stsc151076g00003 417 FunFam lysine-specific demethylase JMJ30 175 408 - -
Stsc151076g00003 417 ProSiteProfiles JmjC domain profile. 275 417 IPR003347 -
Stsc151076g00003 417 Gene3D Cupin 174 409 - -
Stsc151076g00003 417 SUPERFAMILY Clavaminate synthase-like 178 409 - -
Stsc151076g00003 417 Pfam Cupin-like domain 186 409 IPR041667 -
Stsc151076g00003 417 SMART cupin_9 266 416 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151076g00003 Stsc-Chr151076 22145 26034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151076g00003 170 408 Acyl Lipid Metabolism Gene Families AT3G45880 24.916 7.80e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc151076g00003 Cupin_8 6.7e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151076g00003 K24444 - gmx:100813075 662.144