Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151075g00014 ATGGCCACCACCGCCAACAGCAGCAGAGCTTGCAAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCAGTGTTGCTTCTCCCATGAGAGAAATGACCCTTCTTTAGATATTTGCCTGTTCTATCAGAAGGGCTACTGCGCTTATGGCAGTCGATGCCGGAATAGGCATGTCAAACCATCACAGCCATTGACATCAGGTTCAGCAAATGGACCCCTATCTGTGGTTTCACAACCTGCCACGACTCCTAGTGTTGCTAAGGGAAAATATACTTGGGTTCGGAAGCCGGATACAAAGGTGTTGTCATCAATTGACAAACATGCTAATACCTTACAAGACAAGAATCAGCATTCTCAAGGGACTCATTGTGAAGTTGGTGAATCAAGTGGTGCTGCTATGCTCGATGAGAATTTGTTCTGTGAATTTGATGCTGCCAACTGCAGCTCAGGGGATAAGTGTACCAAAATTCATGGAATCCACTGCTTGTACTGCAGAAAGCCTTGTTTGCATCCGACCAATCTGAAGCAAAGGTGGCACCACTTGAAGATATGCAAGGAAAAGGCTGAGATAGTGAAGAATAGTCAATATATAGAATGCAGTGTTTGCCTGGAGCGCGTGCTGGGGAAGCCTAGACCATCTCTGCGCAAGTTCGGGTTGCTACCTGAATGTGACCATGCTTTCTGTTTACACTGCATCATGAGTTGGCGCAAGAAGGCTCCATCCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCGCCTTTTTATGTTCAAAGTGAAATTTGGTATTCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTTCAAGGCGAACTGCAAGCTGATTGATTGCAGGTACTTTAAATTTGGAAGTGGGAGGTGCCCTCATGGAACTAGTTGTATTTACAAGCATACTGTACAACCTGCCAAGTCTAAACGGAACAGGAGCAGGAACAGAAACAGGAAGCATAAGGGGCCACCATCTTCAATCGGAGGAGACCATCTCAACAAATACGACATCATGGCTGAGCTAAGTGAATTTGATTTGCATCCTCTTGAGTTTTATCACATCTTGAAGGACATGGAATCGTTCGATGATATGGACATGTTCGAGAAGATGGCTTTAGCTGATGAGCTGGCTGGTCCTACTTACGAAGATTCATGTTTCTTTCCCCGGGGTGATTTCATTGACAGTGACGATGATTTTGGTGAAGAATTTGATGATGATGATGATGAATTTTTATCAATGATGGCTTTTGGTATGCCGCCATTTGGATTCTGGGATGACGAATTCGAATACAGCGATGATGAAGAGAGCGATGAGGATGATGAAGACAGTGATGATGAAGAGAGTGATGAGGACTAA 1368 0.4459 MATTANSSRACKFYARGTCLKGEQCCFSHERNDPSLDICLFYQKGYCAYGSRCRNRHVKPSQPLTSGSANGPLSVVSQPATTPSVAKGKYTWVRKPDTKVLSSIDKHANTLQDKNQHSQGTHCEVGESSGAAMLDENLFCEFDAANCSSGDKCTKIHGIHCLYCRKPCLHPTNLKQRWHHLKICKEKAEIVKNSQYIECSVCLERVLGKPRPSLRKFGLLPECDHAFCLHCIMSWRKKAPSNAMDCPVCRKHSPFYVQSEIWYSTKEEKQAIIDNFKANCKLIDCRYFKFGSGRCPHGTSCIYKHTVQPAKSKRNRSRNRNRKHKGPPSSIGGDHLNKYDIMAELSEFDLHPLEFYHILKDMESFDDMDMFEKMALADELAGPTYEDSCFFPRGDFIDSDDDFGEEFDDDDDEFLSMMAFGMPPFGFWDDEFEYSDDEESDEDDEDSDDEESDED 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151075g00014 455 MobiDBLite consensus disorder prediction 308 335 - -
Stsc151075g00014 455 Pfam Ring finger domain 198 250 IPR001841 -
Stsc151075g00014 455 ProSiteProfiles Zinc finger C3H1-type profile. 33 60 IPR000571 GO:0046872
Stsc151075g00014 455 MobiDBLite consensus disorder prediction 61 80 - -
Stsc151075g00014 455 MobiDBLite consensus disorder prediction 428 455 - -
Stsc151075g00014 455 ProSiteProfiles Zinc finger C3H1-type profile. 5 32 IPR000571 GO:0046872
Stsc151075g00014 455 SMART ring_2 199 249 IPR001841 -
Stsc151075g00014 455 SUPERFAMILY RING/U-box 194 256 - -
Stsc151075g00014 455 PANTHER MAKORIN-RELATED 10 327 IPR045072 GO:0000209|GO:0061630
Stsc151075g00014 455 SMART c3hfinal6 279 307 IPR000571 GO:0046872
Stsc151075g00014 455 SMART c3hfinal6 135 159 IPR000571 GO:0046872
Stsc151075g00014 455 SMART c3hfinal6 7 31 IPR000571 GO:0046872
Stsc151075g00014 455 SMART c3hfinal6 33 59 IPR000571 GO:0046872
Stsc151075g00014 455 MobiDBLite consensus disorder prediction 430 455 - -
Stsc151075g00014 455 ProSitePatterns Zinc finger RING-type signature. 223 232 IPR017907 -
Stsc151075g00014 455 MobiDBLite consensus disorder prediction 309 325 - -
Stsc151075g00014 455 ProSiteProfiles Zinc finger RING-type profile. 199 250 IPR001841 -
Stsc151075g00014 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 281 IPR013083 -
Stsc151075g00014 455 ProSiteProfiles Zinc finger C3H1-type profile. 279 308 IPR000571 GO:0046872
Stsc151075g00014 455 SUPERFAMILY CCCH zinc finger 8 30 IPR036855 GO:0046872
Stsc151075g00014 455 Gene3D - 2 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151075g00014 Stsc-Chr151075 141018 144969 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151075g00014 zf-RING_2 7.6e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151075g00014 K15687 - gmx:100819577 387.882