Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151075g00006 ATGGGCGCACTAGTTCAAGAGGAAACAGGCAAAGGCGAGTTTCTGTACTCGTCTTTGCACCGGTCTCCGGATTCTATTACTAGAAATCCGGCTAATAGTACTAATTATGACAACAATAACGAAGATGACAAAGAAGACGAAGATGAAAGTGTGACTGTTGCCCTACGCATAGGGCTTCCAAGAATGGATACTTTTTATGATCTTGAAGGTTCAAGAAAGGACTCAACTAGTTCAATAATGGAAATTATGGCTGCTGAGAAAGATGAAGAAGTGATGAACAATAATAAAAATAATGTGATTTCTGGGAACCCTTTTGAGAGATTCAACATTAACAAGAACAATAAGGGTCACTATTGGATTCCCACACCTTCCCAGATTCTAATTGGACCTACACAGTTCTCATGCCATCTTTGCTCCAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGATTCTCTAAAAGGAACACAACCAACAGGAATGCTAAGGCTTCCATGCTTTTGTTGTGAACAAGGTTGCAAGCACAACATAGACCACCCTAGGGCAAGGCCCTTGAAAGATTTCAGAACCCTCCAAACACATTATAAGAGGAAGCATGGCATCAAGCCCTATTTGTGCCGGAAATGCCGGAAGTCGTTCGCCGTCAAAGGCGACTGGCGGACGCATGAGAAGAACTGCGGCAAGGTTTGGTATTGTTTGTGTGGATCTGATTTCAAGCACAAGAGATCACTAAAGGATCATATTAGGTCATTTGGAGATGGACATGGAGCCTTTGGGATTCAGAGTTTGCAAGAATTTGAAGATGAAGCTGCTTCAGAAGCTGAACATGATGGGGAAAGTAGTTCATTGTGA 891 0.422 MGALVQEETGKGEFLYSSLHRSPDSITRNPANSTNYDNNNEDDKEDEDESVTVALRIGLPRMDTFYDLEGSRKDSTSSIMEIMAAEKDEEVMNNNKNNVISGNPFERFNINKNNKGHYWIPTPSQILIGPTQFSCHLCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTGMLRLPCFCCEQGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYLCRKCRKSFAVKGDWRTHEKNCGKVWYCLCGSDFKHKRSLKDHIRSFGDGHGAFGIQSLQEFEDEAASEAEHDGESSSL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151075g00006 296 MobiDBLite consensus disorder prediction 20 37 - -
Stsc151075g00006 296 SUPERFAMILY beta-beta-alpha zinc fingers 126 155 IPR036236 -
Stsc151075g00006 296 SMART c2h2final6 180 212 IPR013087 -
Stsc151075g00006 296 SMART c2h2final6 133 155 IPR013087 -
Stsc151075g00006 296 SMART c2h2final6 217 237 IPR013087 -
Stsc151075g00006 296 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Stsc151075g00006 296 Gene3D Classic Zinc Finger 215 265 - -
Stsc151075g00006 296 Gene3D Classic Zinc Finger 131 155 - -
Stsc151075g00006 296 PANTHER ZINC FINGER PROTEIN WIP2 36 288 IPR043584 GO:0003700|GO:0010468
Stsc151075g00006 296 MobiDBLite consensus disorder prediction 1 49 - -
Stsc151075g00006 296 SUPERFAMILY beta-beta-alpha zinc fingers 201 237 IPR036236 -
Stsc151075g00006 296 FunFam Zinc finger protein WIP2 186 268 - -
Stsc151075g00006 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151075g00006 Stsc-Chr151075 74061 76631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151075g00006 110 288 C2H2 Transcription Factor Family AT3G57670 81.006 8.33e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151075g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151075g00006 - - gmx:100794446 395.586