Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151073g00025 ATGAACGAGAAGGCCAACGTAACCAAGGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGGCTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAGGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTCATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTCTGGACACTTGGCTCCCCGAGCAAGTTGCATTCATTCAGTCCATGGGGAATGAGAGAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAACTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGGTTGCAAGGGATGGGAAACCAAAATCACCATCTAGACTACGAGAAGAGAAAAGTCCTTCACCTTTGCAGAGACCTGTGGAAAGAAGTGGGCATGGTTATGCAGCTGCTTCTGAGAATACAGTTGAGGAAAGGAAGAAAAACCAACCTTCAAAACCAAGTCCTGCTGCAAGAATTAGCATTCTTACTCCTCCCAAAGCATCTGAACATGTTACTCCTGTTAGCAAACCTCAGCAGCATGTTGAGAAAGCGGAACCAGCAGCACCCCAACCACAAGTTGAAACTTCAAAGCAGGTTACAGACACAGCTCAAAATATTCCTGCAAAAGTTGATTATGCTACAGATCTTTTCAACCTGTTATCAATGGATGGCCCTAGTGAAAATGGCTCAGAGGCAACTGGTACTACCACTGAAGATAATAACTGGGCAGGTTTCCAATCTGCTCCAGTTGGTTCAACAACTGAGAAAGCCGGTCCTCCAAAAGCAGTTGAGAGTACTCCCCAGTCTGCGTCTGGAATTGAGGATCTATTTAAAGATTCATCTTCTGTGACACCAAGCTTAACCGCAGAGAAACCCCAGAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATATAGTGTCTCCATTCGCTATGCATCAACAGCAGCTTGCCATGTTAGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCAAATGTTGGAGATCCCAAGTACCCTGCTGGTATACAGCAACCTATGCCCAATGTCCCTATTCAGAATTGGCCTGCTGCTGGTTACTCAATTCCTGGAGTCATGCCCATGGGTGGTCAAGGAGATTTGCAGAAACTTATGCAGGTAGCGGCTCAGACTAGGGGCATGACTCCACCACAATCAGCTGGGAGCTCTGTTCAGTATCCACCATCTGGTTTCTATGGCATGGGGCAAGTCGCTCCAGTTAATGGAACAACGACAACGGGAGTGAGTAAAACTCAATCAGCAACTCCAGCATCATCGACCACTTCACAATCTGCAAAAGATTATGATTTTTCCTCCTTAACTCAAGGGATGTTTGCAAAGCCTTGA 1443 0.4484 MNEKANVTKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARDGKPKSPSRLREEKSPSPLQRPVERSGHGYAAASENTVEERKKNQPSKPSPAARISILTPPKASEHVTPVSKPQQHVEKAEPAAPQPQVETSKQVTDTAQNIPAKVDYATDLFNLLSMDGPSENGSEATGTTTEDNNWAGFQSAPVGSTTEKAGPPKAVESTPQSASGIEDLFKDSSSVTPSLTAEKPQKDVKNDIMSLFEKTNIVSPFAMHQQQLAMLAQQQSLLMAAAAKSNVGDPKYPAGIQQPMPNVPIQNWPAAGYSIPGVMPMGGQGDLQKLMQVAAQTRGMTPPQSAGSSVQYPPSGFYGMGQVAPVNGTTTTGVSKTQSATPASSTTSQSAKDYDFSSLTQGMFAKP 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151073g00025 480 CDD ArfGap 19 117 - -
Stsc151073g00025 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 479 IPR044520 GO:0005096
Stsc151073g00025 480 MobiDBLite consensus disorder prediction 244 291 - -
Stsc151073g00025 480 MobiDBLite consensus disorder prediction 124 144 - -
Stsc151073g00025 480 MobiDBLite consensus disorder prediction 244 274 - -
Stsc151073g00025 480 MobiDBLite consensus disorder prediction 124 225 - -
Stsc151073g00025 480 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Stsc151073g00025 480 MobiDBLite consensus disorder prediction 440 480 - -
Stsc151073g00025 480 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Stsc151073g00025 480 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Stsc151073g00025 480 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Stsc151073g00025 480 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Stsc151073g00025 480 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Stsc151073g00025 480 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Stsc151073g00025 480 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Stsc151073g00025 480 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Stsc151073g00025 480 MobiDBLite consensus disorder prediction 440 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151073g00025 Stsc-Chr151073 161496 168197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151073g00025 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 4.25e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151073g00025 K12486 - gmx:100780452 716.457