Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151073g00023 ATGGCTGCAGCTTTAGATTTCAACGGAGGCTTCAACAACAACAACAACACCTTCACGTTCTGCTGCTTTTACTGCAAGTCGATGACCACATCCTTCCGATATGGCTGGTCACTTTCCGATGGCACCTTGGCAAAACTCTGTTTTCAATGCGGGTTTCTGTATGAAAGTGGAACATTTTGTAGCACATTTCACGCTGGAACTACGGGGTGGAGGCAATGTATCATTTGTAGAAAGCATGTTCATTGTGAATGCATTGCGTCTGCCAAGGACATTTTCATGATGAACAATGGAGGCGTTTGTTGCATAGGTTGTGCAAAGAAATATCTTCTTCCCGCTGCTGAGGATAACACTGAACACAAGCCCGTGAATGATTGTCCTCCATTATTATTTGCTTGGAATAATTCCATTGCTTCTCAATCCATGGACCATCCTTTCAATGCCATGGCTACAGCTGCAAATGAATCAAATCAAATGGTTATGTGTGGAGCACAAATGGAAGAACAAACTCCTGTAATAATAGGGGGTGGTTCATCATCAACAGCCATGAATGATAATGTTAATGGGTGTTGCTTATTTGTTTCACCTCAAACTGGTTTGATCCGTTTCCTGAATTATTATCAGATGAAAGAGCAGCAGTATTTGAAAGATTTGGGATATCCGAATTCTTCAATTACCCCAATGTTCAAGAAAATTCTAAGTGCAACTGATGCTAAAGCCAAGAGTGGACGTCTTGTGATACCAACCAAAGGCGCCAGGAGTCATTTTCCAGAACTTAGTGATGATGAACGATGCAAGCGGCTTGAGATTTTAGACATCACAGGGAGGATTTGGAAGTTAAGCTACCGATTTTGGGAGAACAATAGAGGCAGAATTTATGTTCTTGGAGGCCTTAAAGACTATATTACTATGTGGAAGTGGCAAGTTGGTGAACAAGTCACATTTTATCGAATTGATCCAGAGGACAAATATCTTATTGTAACTGAAAAAGAATTTCCTGCATCATCATCTTAA 1011 0.4075 MAAALDFNGGFNNNNNTFTFCCFYCKSMTTSFRYGWSLSDGTLAKLCFQCGFLYESGTFCSTFHAGTTGWRQCIICRKHVHCECIASAKDIFMMNNGGVCCIGCAKKYLLPAAEDNTEHKPVNDCPPLLFAWNNSIASQSMDHPFNAMATAANESNQMVMCGAQMEEQTPVIIGGGSSSTAMNDNVNGCCLFVSPQTGLIRFLNYYQMKEQQYLKDLGYPNSSITPMFKKILSATDAKAKSGRLVIPTKGARSHFPELSDDERCKRLEILDITGRIWKLSYRFWENNRGRIYVLGGLKDYITMWKWQVGEQVTFYRIDPEDKYLIVTEKEFPASSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151073g00023 336 Pfam B3 DNA binding domain 238 324 IPR003340 GO:0003677
Stsc151073g00023 336 SMART B3_2 228 330 IPR003340 GO:0003677
Stsc151073g00023 336 CDD B3_DNA 226 325 IPR003340 GO:0003677
Stsc151073g00023 336 SUPERFAMILY DNA-binding pseudobarrel domain 224 328 IPR015300 -
Stsc151073g00023 336 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 24 153 - -
Stsc151073g00023 336 Gene3D - 206 331 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151073g00023 Stsc-Chr151073 146965 150772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151073g00023 24 325 B3 DNA Binding Superfamily AT4G32010 28.150 4.19e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc151073g00023 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151073g00023 - K09287 adu:110274859 279.256