Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151073g00020 ATGGAAACTGTGGTTGAGATTCAGGACAGGCATGATGCGGCGAAAGAGATCGAGAAGAGCTTGCTTGAATTGCATCAGGTGTTCTTGGACATGGCAGTTGTGGTGGAGGCTCAAGGGGAGAAGATGGATGACATTGAACACCATGTGATCCATGCTTCTCACTATGTTAAGGATGCTAACAAAGAGCTTGTAACCGCTAACAAGTATCAGAGGAACAACAGGAAGTGGCTCTGCATTGGGATCATCATTCTTCTCATCCTCGTCATTGTCATTCCCATCGCCACAGGGCGAAGCCATGTATAA 303 0.4686 METVVEIQDRHDAAKEIEKSLLELHQVFLDMAVVVEAQGEKMDDIEHHVIHASHYVKDANKELVTANKYQRNNRKWLCIGIIILLILVIVIPIATGRSHV 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151073g00020 100 Gene3D - 1 95 - -
Stsc151073g00020 100 FunFam Syntaxin 132 1 95 - -
Stsc151073g00020 100 Pfam Syntaxin 1 39 IPR006011 GO:0016020
Stsc151073g00020 100 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 4 66 IPR000727 -
Stsc151073g00020 100 CDD SNARE_syntaxin1-like 3 65 - -
Stsc151073g00020 100 SMART tSNARE_6 1 66 IPR000727 -
Stsc151073g00020 100 SUPERFAMILY SNARE fusion complex 5 71 - -
Stsc151073g00020 100 Pfam SNARE domain 40 91 IPR000727 -
Stsc151073g00020 100 PANTHER SYNTAXIN 6 84 IPR045242 -
Stsc151073g00020 100 ProSitePatterns Syntaxin / epimorphin family signature. 10 50 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151073g00020 Stsc-Chr151073 135910 136212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151073g00020 1 78 SNARE and Associated Proteins AT1G08560 78.205 3.79e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151073g00020 K08486 - egr:104426753 153.295