Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151073g00015 ATGATAACAGTAGCGATGACAGTGTTGTTGATGATGTTCCTGTTCCAATACCTTCCGAAAATTTATCACTCGGTGTGCCTCTTGCGTCGCATGCAAAACCTCACTGGCTACGTTTTTGGAACTGTTTGGTGGGGCATTGCCCTCAACTTGATCGCTTATTTTGTCGCTTCTCATGCAGCAGGAGCATGTTGGTACTTGCTGGGGGTGCAAAGGGCAGCCAAGTGCCTGAAAGAGCAGTGTAGAAAGACATCTGGTTGTGGAGTGAGAAGCCTATCTTGCAAGCAGCATATATATTATGGTTATGGAAGCAATGGGATTGTGAGGGAGAAGGCAAGATTAGCTTGGGCAGCAAATAGGGAAGCAAGGTCAACATGCCTTGATAGCCCTGATAACTATGACTATGGTGCTTATTCATGGACTGTACAGCTTGTCACCAATGATAGCCGCTTGGAAAAGATTCTCTTCCCCATCTTTTGGGGCCTCATGACTCTCAGCACATTTGGGACCCTAGAGAGCACAACAGAATGGGTAGAAGTTGTTTTCAACATTATTATATTAACTAGTGGCCTTCTCCTAGTTACTATGTTGATTGGAAACATTAAGGTATTTTTGCACGCTACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAATATTGAATGGTGGATGAGCAAGAGGCGGTTGCCACAAGGGTTTAGGCAGCGCGTCCGCAACTACGAGCGCCAGAGATGGGCTGCCATGCGTGGAGTTGACGAATGCCAGATGATCAAAAACCTCCCCGAAGGGCTCAGGAGGGACATCAAGTATCATCTTTGTTTAGATTTGGTCAGACAGGTACCCTTATTTCAGCACATGGATGATCTGGTCTTGGAAAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAGGGAGAAACAATCACTAGAGAGGGCGATCCAGTTCAAAGAATGCTATTTGTTGTAAGGGGCCACCTTCAAAGCAGCCAAGTCCTAAGAGATGGGGTCAAGAGTTGTTGCATGTTAGGCCCCGGGAACTTCAGCGGTGACGAACTCCTCTCTTGGTGTCTAAGGAGGCCGTTCATCGAGCGCCTCCCGCTGTCCTCATCCACATTAGTCACACTCGAAACCACCGAGGCGTTTGGCCTTGAAGCCGAAGATGTGAAGTATGTGACACAACATTTTAGGTATACTTTTGTGAAGGAAAAAGTGAGAAGGAGTGCGAGGTATTACTCACCAGGGTGGAGGACTTGGGCTGCCGTGGCTATTCAATTGGCTTGGAGGAGATACCGGCACCGGTTGAGTTTGACTTCGTTGTCCTTTATTAGGCCTAGAAGGCCTGTGTCAAGGTGCTCTTCCATGGAAGAGGATAGGCTTCGCCTATATACGGCCATGTTAACTTCACCAAAGCCTAATCAAGATGATTTTGACGTTTGA 1443 0.4699 MITVAMTVLLMMFLFQYLPKIYHSVCLLRRMQNLTGYVFGTVWWGIALNLIAYFVASHAAGACWYLLGVQRAAKCLKEQCRKTSGCGVRSLSCKQHIYYGYGSNGIVREKARLAWAANREARSTCLDSPDNYDYGAYSWTVQLVTNDSRLEKILFPIFWGLMTLSTFGTLESTTEWVEVVFNIIILTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQGFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPLSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVRRSARYYSPGWRTWAAVAIQLAWRRYRHRLSLTSLSFIRPRRPVSRCSSMEEDRLRLYTAMLTSPKPNQDDFDV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151073g00015 480 SMART cnmp_10 283 412 IPR000595 -
Stsc151073g00015 480 Gene3D Helix hairpin bin 208 274 - -
Stsc151073g00015 480 Pfam Cyclic nucleotide-binding domain 303 391 IPR000595 -
Stsc151073g00015 480 FunFam Cyclic nucleotide-gated ion channel 1 210 274 - -
Stsc151073g00015 480 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 477 - -
Stsc151073g00015 480 SUPERFAMILY cAMP-binding domain-like 209 398 IPR018490 -
Stsc151073g00015 480 SUPERFAMILY Voltage-gated potassium channels 10 204 - -
Stsc151073g00015 480 CDD CAP_ED 283 389 IPR000595 -
Stsc151073g00015 480 ProSiteProfiles cAMP/cGMP binding motif profile. 283 362 IPR000595 -
Stsc151073g00015 480 FunFam cyclic nucleotide-gated ion channel 4 281 399 - -
Stsc151073g00015 480 Pfam Ion transport protein 9 201 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc151073g00015 480 Gene3D Jelly Rolls 281 399 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151073g00015 Stsc-Chr151073 101680 106192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151073g00015 13 479 Ion Channels AT5G54250 84.368 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151073g00015 K05391 - cpap:110820661 882.093