Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151072g00022 ATGCCGGATTTCTTGGGTTCCGTTCGCCGATCCTTTGTCTTCAGAACCCCACCTCCAGCCACTGCCACAACCGACGATGATGGACCCTTCGCCGGAATCGTCGACCGGATCGGTTCTACCATCCGCAAGTCCAGTGTCGGACTCTTCTCACAGCCCCGCCTCAAGCGGCCCCTTCTTCCTTCGCCGCCGACACCTCCCAAGTGCTCCGACGACGCCCCTCCTTTCCGGTGGCGGAAGGGCGAACTTATCGGCAGCGGCGCCTTCGGTAGAGTGTACATGGGAATGAATCTTGACTCTGGCGAGCTTATTGCTGTCAAACAGGTTTTGATTGCGCCTGGGTGTGCTTCCAAGAAGAATACTCAGGCTAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATTCAAATATTGTTAGATACTTGGGAACTGCTAGAGAGGAGGATTCCTTAAATATTCTACTGGAGTTTGTTCCGGGTGGATCTATCTCTTCTCTCCTTGGGAAATTTGGATCCTTCCCTGAGCTGGTTATCAAAATGTATACAAAACAACTTCTACTGGGCCTCGAATACCTCCATGATAATGGGATTATTCACAGAGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGCATTAAACTAGCAGACTTCGGTGCATCCAAGAAAGTTGTTGAACTGGCAACTATTAACGGTACAAAGTCAATAAAGGGTACGCCGCATTGGATGTCTCCTGAAGTCATTTTACAGACAGGACATACAATCTCTACTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGTCAACAGTATCCTCAAGAGGCTTCTGCTCTTTACTACGTTGGGACAACTAAATCTCATCCACCCATACCTGAAAATCTGTCTGCTGAGGCAAAGGACTTTCTGCTGAAATGCTTCCACAAGGAACCAGATCTGAGGCCTTCTGCATCAGACTTGCTACTGCATCCTTTCATCTCCTGCAATTACCCCGAGTCTCCATCAATGTTATGCAGTTCAATCAGGGACTCTTTCAATGCAACACACGAGAAGAAATCTAGAGACTTGTTGGATTCTGTTCGGGGATCGACCTGCGCAGGCCTGAAGGATGTCTGTCAACTGGATAGCATAAGATTCTCAACTGTGTATTCTGAAAATCTTCTAAAGGCAGATTGCTACCAGAGAGCTGACAGCAACGATGACGACATATGTCAGATAGATGATGAAGATGATGATTTAGTTGACACATCAATAAAACCAAAATCTCTATCTGTTTCTGAAGATATAAAGAGCTTCAATCCAATGTGCGAACCTGTGGATGACTGGCCTTGCAAGTTTGATGAAGATCAAAATTTAAAGAAAAGCAGAATGAACTTGTCTTCACCTCAAGTTGTTAATGGAACTATGACAAGTGCTGAACCATATCCATGTGAGAATTTAGGAGCTGAAGATGATGACGAACTCACTGAGTCCAAAATTAAAGCCTTCTTGGATGAGAAGGCCTTTGAACTGAAGAAACTCCAAACACCACTTTTTGAAGAATTCCTTAATGTTTCAAATGCGGCCATTGCTCCTGCATCTATTGCAATTGTACCAAGTAATGATGTTTTGAAAATCCCAAATGCAACATCACAGGGTAGATCTCCTAGTCATGCTAGGAGACGATTGTCAATGGCTGGTAGTGCCATTGATTCAAGCAGTAATAGTCATAACAAATATCAACGAAAGCTTTGTGGTGCACCTAATCAGCCTTTGCAGGAAATCCAGCCTTCTGAGCTTAACGAATCAAAGAAGACTCTTCATGTAGCTCAGCCAGATTCATTTAGTGTTATGTCTAGCTTCTATGAGAGACAAAGAAAATGGAAAGAAGAACTTGCTGAAGAACTTGAGTTTAAGCGAGAGATGATGCGTAAGGCAGGATTAGGAGGGAAGATAACTTCTCCGAAAGATCGCAAGTTTTATGGAAACTGA 2013 0.4426 MPDFLGSVRRSFVFRTPPPATATTDDDGPFAGIVDRIGSTIRKSSVGLFSQPRLKRPLLPSPPTPPKCSDDAPPFRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIAPGCASKKNTQANIRELEEEVKLLKNLKHSNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPELVIKMYTKQLLLGLEYLHDNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGTKSIKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPQEASALYYVGTTKSHPPIPENLSAEAKDFLLKCFHKEPDLRPSASDLLLHPFISCNYPESPSMLCSSIRDSFNATHEKKSRDLLDSVRGSTCAGLKDVCQLDSIRFSTVYSENLLKADCYQRADSNDDDICQIDDEDDDLVDTSIKPKSLSVSEDIKSFNPMCEPVDDWPCKFDEDQNLKKSRMNLSSPQVVNGTMTSAEPYPCENLGAEDDDELTESKIKAFLDEKAFELKKLQTPLFEEFLNVSNAAIAPASIAIVPSNDVLKIPNATSQGRSPSHARRRLSMAGSAIDSSSNSHNKYQRKLCGAPNQPLQEIQPSELNESKKTLHVAQPDSFSVMSSFYERQRKWKEELAEELEFKREMMRKAGLGGKITSPKDRKFYGN 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151072g00022 670 SUPERFAMILY Protein kinase-like (PK-like) 76 341 IPR011009 -
Stsc151072g00022 670 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 65 343 - -
Stsc151072g00022 670 MobiDBLite consensus disorder prediction 56 70 - -
Stsc151072g00022 670 CDD STKc_MAPKKK 76 340 - -
Stsc151072g00022 670 SMART serkin_6 77 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151072g00022 670 ProSiteProfiles Protein kinase domain profile. 77 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151072g00022 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Stsc151072g00022 670 Coils Coil 117 137 - -
Stsc151072g00022 670 Pfam Protein kinase domain 78 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151072g00022 670 Gene3D Transferase(Phosphotransferase) domain 1 76 375 - -
Stsc151072g00022 670 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Stsc151072g00022 670 MobiDBLite consensus disorder prediction 52 73 - -
Stsc151072g00022 670 MobiDBLite consensus disorder prediction 555 591 - -
Stsc151072g00022 670 FunFam Mitogen-activated protein kinase kinase kinase 2 76 369 - -
Stsc151072g00022 670 MobiDBLite consensus disorder prediction 574 590 - -
Stsc151072g00022 670 FunFam Serine/threonine-protein kinase STE11 74 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151072g00022 Stsc-Chr151072 108631 114185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151072g00022 1 658 MAP Kinase Kinase Kinase AT3G06030 55.075 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc151072g00022 Pkinase 1.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151072g00022 K20606 - gmx:100795863 876.7