Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151072g00008 ATGTACTCGGAAAATCTGATACTCTCCGCCGAAAACCCTAGACCCTTCGCGTTTCAGCTACCTCTATCTTCTTCTTCTACTACTACTTCTACTACTTTGGCCAACGCGAAACCCATGAGCAATGAGATCGCACAGAAGCCTCCCCCTTCCATTCTCGTTGGCAGGTTCAAAACTCTGCTCAAGCAGCGAGACGACGAGCTCAGGGCCACCCTAATCGGCGGCGCTGGTCACGTGCCGCCTCCGTCAACGGAAGAAATCGTTCAGATTTACGAGATGCTGCTGTCGGAGCTCACGTGCAATCTGAAGCCTATCATCACCGATCTTACCATCATCGCTGAGCAGCAGAGGGAGCACGCCAGGGGAATCGCCGACGCTATTTGCGCTCGGATTCTCGAGGTCTGTCTCGGTTTCCGCGGAAAAGTTCTTCTCTTTTTCTTTTTCTTCTTGGAATTTTGTAAAAATCCCATTTTGGAGTTCGGATCCAAGATACTGCTACTGTTATATTTGGGTGAAAGTTTCAGTTTTCGCAACTTGAATGACATAAGTTGGGTTCTAAGTCTTTTGCATTTTATTTTATTTTGTTGTTTTTGTCTCTGA 597 0.4724 MYSENLILSAENPRPFAFQLPLSSSSTTTSTTLANAKPMSNEIAQKPPPSILVGRFKTLLKQRDDELRATLIGGAGHVPPPSTEEIVQIYEMLLSELTCNLKPIITDLTIIAEQQREHARGIADAICARILEVCLGFRGKVLLFFFFFLEFCKNPILEFGSKILLLLYLGESFSFRNLNDISWVLSLLHFILFCCFCL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151072g00008 198 Gene3D - 80 141 IPR008942 -
Stsc151072g00008 198 ProSiteProfiles CID domain profile. 82 198 IPR006569 -
Stsc151072g00008 198 SUPERFAMILY ENTH/VHS domain 81 134 IPR008942 -
Stsc151072g00008 198 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 68 133 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151072g00008 Stsc-Chr151072 35110 35706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151072g00008 37 132 C2H2 Transcription Factor Family AT4G04885 62.887 8.09e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151072g00008 K14400 - gmx:100787354 172.555