Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151072g00007 ATGCGCCATCTCTTTGGCACCTGGTCAAAAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTTGTTAATAATAGTCAATCGTCCACAATGAATCCCCTCAGAGCATCTGAATCTCCTAGACCAAGTCATGGCATACATGTAAACCCAAAGTACTTGCGGCAGTTGGATCGCTCAACTGTGGATAGTGTTGGTGGTGAAAAGTTTGACTTAGCAGGAAAGCCTAGTAATACAAATTTTGGCCTTGTAGCTAATAAGACGAATCAATTTGTATCTAGCAGACTTGGAATATCCTCTTCACCTTCAAGAATTGGTCTAGATAGGCCTTTGTCGGCAGCAGATGAATATGCAGTTGACAATTCTTCTGGAAGGATAGTTGAGAGAGAGTCTCCTCATAATTATGGAGTACCAAGAGTAGTAGGTAGAGAGGAAGAATTGGGTGAATGGCAGAGAAAGCAGTACTCTGGTGATATTCGAAATCGATTTCAACTTCCTATGACGTACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCTTTAATTGATGCTTATGGCAGTGACAAAAGCCAAGAAACTTCAAGCAGCAAGCCTCTTTTACTTGATCGGCTAGATAGAAATGGTATTGACAACAAAGCGACATCTTGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAATGGCTTCCTGCAATCAACTGCTTTTTCCAGGGATAAGCCTGTTGCTGTAGCATCTAATGCAATTTTGTCAGAGCAAGATACAAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCAGTAGAAGATTCTTCTGTCATAGCGGCAGATGCATTTCCCCCTTCAGTTTATGGTCGTGTATCCATGGGGCAGGTATCTGGTTTCCAAAATCAAATAAATCCGAGTCTGGGTTCCCGTCAACCTCATGATACTTGGAAGGTTTCTCAATCACAAACAATGCTTAATATTAGGGGCCGAGGAAGGAGCCTTTTGATGCCTCTTATTGAAAACAATCCCAATAATGATGTAAACCCCTATGGGATTCGACCTGCAGTGTCAAGGATGGTTTCTGGTATTGCCTCTAACGTAGAGCCTCGTCCACCAGTTTTGCCTGGATCTTTTGAAATAAGGCCTTCTGTAACTGTGCATGGTACTCGTCCTCCCACCTTAAATCCAACATTTCCACTGCAAAAGCATGTTAGAAGTCAGTTTGATGCAATAAATACCAATAATCCCATTATGAATCATGGCCCAAATAAATCTCTGTTCATTCCTGAACAGCCAGGGCTGGACTCTGTTGAAAACAGGGATGCCGGTAAAGGAAAGATACATCAGTTGCCTAATCAGCTTGCTGGATTGATTCCATCCAACCTGCAAAACCTTGGACAAACATCACAACATTTTTTCCCATCTCGGGATCCATCGTCGTCACATTTTGGTCATGTGAGCTCTTTGCAAGGACATGGCCCTTCTATAAGTGCAGCTATGTCAAATCCATTACCTATACAATTTCCTTTACCAGTCCAAGGTATTGCAAATAATTCCTTACAATTACAGGGGGGAGTCCATCCACCTTTACCTCCAGGTCGCCCTCCTGCTCCATCTCAAATGATACCTCATCCAAATGCTGGTCCATATGTATCAAACCAACAGCCGCCTGTTGCATATACTAATTTAATTAGTTCGCTTATGTCCCAAGGCGTGATCTCATTGGCTAATCAACCCTCTGGACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGATTCGTCATGAGTCTGCAATCAGTGCCTTATATGGAGATCTCCCTAGACAATGCACCACTTGTGGACTTAGATTCAAATGCCAGGAGGAGCACAGTAGTCATATGGATTGGCATGTGACAAAGAACAGGATGTCCAAAAGTCGCAAACAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGACAGGATGTGGCTCACTGGTGCGGAGGCATTGGGAACAGAATCTGTTCCTGGTTTTCTGCCAACTGAGGCAGTAGAAGAGAAAAAAGATGATGAAGAGTTGGCAGTGCCAGCTGAAGAGAACCAGAATACATGTGCATTATGTGGGGAACCTTTTGATGAATTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCCACTGGAGTAACAGCGGGCATGGACAGGTCACAGTTAGGTCCCATTATTCATGCTAAATGCAGATCAGACACTAATACAGCCCCCTCTGAAGATTTTGGGTTGGATGAAGGGGGTGCCAATGAAGAGGGCGGCCACAGAAAACGAATGCGGAGTTGA 2388 0.4372 MRHLFGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSTMNPLRASESPRPSHGIHVNPKYLRQLDRSTVDSVGGEKFDLAGKPSNTNFGLVANKTNQFVSSRLGISSSPSRIGLDRPLSAADEYAVDNSSGRIVERESPHNYGVPRVVGREEELGEWQRKQYSGDIRNRFQLPMTYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLLDRLDRNGIDNKATSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQSTAFSRDKPVAVASNAILSEQDTRKGWSSGSQLPPVEDSSVIAADAFPPSVYGRVSMGQVSGFQNQINPSLGSRQPHDTWKVSQSQTMLNIRGRGRSLLMPLIENNPNNDVNPYGIRPAVSRMVSGIASNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPTFPLQKHVRSQFDAINTNNPIMNHGPNKSLFIPEQPGLDSVENRDAGKGKIHQLPNQLAGLIPSNLQNLGQTSQHFFPSRDPSSSHFGHVSSLQGHGPSISAAMSNPLPIQFPLPVQGIANNSLQLQGGVHPPLPPGRPPAPSQMIPHPNAGPYVSNQQPPVAYTNLISSLMSQGVISLANQPSGQDSVGTEFNPDILKIRHESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLTGAEALGTESVPGFLPTEAVEEKKDDEELAVPAEENQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGVTAGMDRSQLGPIIHAKCRSDTNTAPSEDFGLDEGGANEEGGHRKRMRS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151072g00007 795 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 780 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc151072g00007 795 ProSitePatterns Zinc finger C2H2 type domain signature. 629 649 IPR013087 -
Stsc151072g00007 795 MobiDBLite consensus disorder prediction 765 795 - -
Stsc151072g00007 795 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151072g00007 Stsc-Chr151072 29810 34644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151072g00007 567 795 C2H2 Transcription Factor Family AT4G04885 69.869 1.60e-107 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151072g00007 K14400 - gmx:100794796 1122.07